Multiplexed immune profiling and 3D co-culture assays to assess the individual checkpoint therapy response in head and neck squamous cell carcinoma

BackgroundImmune checkpoint inhibitors (ICIs) have become an integral part of cancer therapy, but only a minority of patients experience durable responsiveness. Response rates vary greatly and are often unpredictable, highlighting the urgent need for predictive biomarkers to guide treatment decision...

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Main Authors: Verena Schweihofer, Daniela Schulz, Raquel Blazquez, Gero Brockhoff, Tobias Ettl, Mathias Fiedler, Sina Heimer, Juliane Schikora, Richard J. Bauer, Anja Kathrin Wege
Format: Article
Language:English
Published: Frontiers Media S.A. 2025-08-01
Series:Frontiers in Oncology
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Online Access:https://www.frontiersin.org/articles/10.3389/fonc.2025.1622008/full
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author Verena Schweihofer
Verena Schweihofer
Daniela Schulz
Daniela Schulz
Raquel Blazquez
Gero Brockhoff
Gero Brockhoff
Tobias Ettl
Tobias Ettl
Mathias Fiedler
Mathias Fiedler
Sina Heimer
Sina Heimer
Juliane Schikora
Richard J. Bauer
Richard J. Bauer
Anja Kathrin Wege
Anja Kathrin Wege
author_facet Verena Schweihofer
Verena Schweihofer
Daniela Schulz
Daniela Schulz
Raquel Blazquez
Gero Brockhoff
Gero Brockhoff
Tobias Ettl
Tobias Ettl
Mathias Fiedler
Mathias Fiedler
Sina Heimer
Sina Heimer
Juliane Schikora
Richard J. Bauer
Richard J. Bauer
Anja Kathrin Wege
Anja Kathrin Wege
author_sort Verena Schweihofer
collection DOAJ
description BackgroundImmune checkpoint inhibitors (ICIs) have become an integral part of cancer therapy, but only a minority of patients experience durable responsiveness. Response rates vary greatly and are often unpredictable, highlighting the urgent need for predictive biomarkers to guide treatment decisions.MethodsWe investigated immune- and tumor-specific expression and secretion profiles in peripheral blood and tumor samples derived from patients with head and neck squamous cell carcinoma (HNSCC). We combined flow cytometry, LEGENDplex™ immune profiling, and preoperative/postoperative serum cytokine analyses to determine checkpoint molecules (e.g., PD-1, TIM-3, LAG-3), immune cell profiles, as well as key markers on tumor cells (CD44, PD-L1, MHC class I/II). In addition, a 3D co-culture model using tumor slices and autologous mononuclear cells from selected HNSCC patients were analyzed upon atezolizumab and pembrolizumab treatment.ResultsCo-expression of PD-1 and TIM-3 on a subset of CD8+ tumor-infiltrating T cells was frequently observed, alongside a pronounced infiltration of myeloid cells in the tumor microenvironment. In the peripheral blood, we detected elevated levels of soluble CD27 in patients compared to controls and distinct preoperative cytokine profiles (e.g., reduced IFN-γ, CCL3, CCL20; elevated IL-15/IL-16). Postoperatively, most cytokines showed lower levels compared to healthy controls but significantly higher CCL2 levels. Furthermore, tumor–immune co-cultures from selected patients showed a stronger apoptotic response and phenotypic differences (e.g., increased PD-1 and CD137 expression) upon atezolizumab treatment. Individual changes in soluble factor release (e.g., Gal-9, sPD-L1, sCD25, and sTIM-3) was noticeable upon co-culture under immune checkpoint therapy.ConclusionsThis study provides proof-of-principle data suggesting that a combined multiplexed marker profiling and a functional 3D co-culture assay may help to explore predictive ICI response for HNSCC patients in the future. However, extensive studies with larger cohorts are warranted to validate and refine this approach.
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series Frontiers in Oncology
spelling doaj-art-fb128e4297c04b18a0c38729cd5e51ea2025-08-20T03:41:08ZengFrontiers Media S.A.Frontiers in Oncology2234-943X2025-08-011510.3389/fonc.2025.16220081622008Multiplexed immune profiling and 3D co-culture assays to assess the individual checkpoint therapy response in head and neck squamous cell carcinomaVerena Schweihofer0Verena Schweihofer1Daniela Schulz2Daniela Schulz3Raquel Blazquez4Gero Brockhoff5Gero Brockhoff6Tobias Ettl7Tobias Ettl8Mathias Fiedler9Mathias Fiedler10Sina Heimer11Sina Heimer12Juliane Schikora13Richard J. Bauer14Richard J. Bauer15Anja Kathrin Wege16Anja Kathrin Wege17Department of Gynecology and Obstetrics, University Medical Center Regensburg, Regensburg, GermanyBavarian Cancer Research Center (BZKF), Regensburg, GermanyDepartment of Oral and Maxillofacial Surgery, University Hospital Regensburg, Regensburg, GermanyDepartment of Oral and Maxillofacial Surgery, Experimental Oral and Maxillofacial Surgery, Center for Medical Biotechnology, Regensburg, GermanyDepartment of Internal Medicine III, Hematology and Medical Oncology, University Hospital Regensburg, Regensburg, GermanyDepartment of Gynecology and Obstetrics, University Medical Center Regensburg, Regensburg, GermanyBavarian Cancer Research Center (BZKF), Regensburg, GermanyDepartment of Oral and Maxillofacial Surgery, University Hospital Regensburg, Regensburg, GermanyDepartment of Oral and Maxillofacial Surgery, Experimental Oral and Maxillofacial Surgery, Center for Medical Biotechnology, Regensburg, GermanyDepartment of Oral and Maxillofacial Surgery, University Hospital Regensburg, Regensburg, GermanyDepartment of Oral and Maxillofacial Surgery, Experimental Oral and Maxillofacial Surgery, Center for Medical Biotechnology, Regensburg, GermanyDepartment of Oral and Maxillofacial Surgery, University Hospital Regensburg, Regensburg, GermanyDepartment of Dermatology, University Hospital Regensburg, Regensburg, GermanyExperimental Ophthalmology, University Marburg, Marburg, GermanyDepartment of Oral and Maxillofacial Surgery, University Hospital Regensburg, Regensburg, GermanyDepartment of Oral and Maxillofacial Surgery, Experimental Oral and Maxillofacial Surgery, Center for Medical Biotechnology, Regensburg, GermanyDepartment of Gynecology and Obstetrics, University Medical Center Regensburg, Regensburg, GermanyBavarian Cancer Research Center (BZKF), Regensburg, GermanyBackgroundImmune checkpoint inhibitors (ICIs) have become an integral part of cancer therapy, but only a minority of patients experience durable responsiveness. Response rates vary greatly and are often unpredictable, highlighting the urgent need for predictive biomarkers to guide treatment decisions.MethodsWe investigated immune- and tumor-specific expression and secretion profiles in peripheral blood and tumor samples derived from patients with head and neck squamous cell carcinoma (HNSCC). We combined flow cytometry, LEGENDplex™ immune profiling, and preoperative/postoperative serum cytokine analyses to determine checkpoint molecules (e.g., PD-1, TIM-3, LAG-3), immune cell profiles, as well as key markers on tumor cells (CD44, PD-L1, MHC class I/II). In addition, a 3D co-culture model using tumor slices and autologous mononuclear cells from selected HNSCC patients were analyzed upon atezolizumab and pembrolizumab treatment.ResultsCo-expression of PD-1 and TIM-3 on a subset of CD8+ tumor-infiltrating T cells was frequently observed, alongside a pronounced infiltration of myeloid cells in the tumor microenvironment. In the peripheral blood, we detected elevated levels of soluble CD27 in patients compared to controls and distinct preoperative cytokine profiles (e.g., reduced IFN-γ, CCL3, CCL20; elevated IL-15/IL-16). Postoperatively, most cytokines showed lower levels compared to healthy controls but significantly higher CCL2 levels. Furthermore, tumor–immune co-cultures from selected patients showed a stronger apoptotic response and phenotypic differences (e.g., increased PD-1 and CD137 expression) upon atezolizumab treatment. Individual changes in soluble factor release (e.g., Gal-9, sPD-L1, sCD25, and sTIM-3) was noticeable upon co-culture under immune checkpoint therapy.ConclusionsThis study provides proof-of-principle data suggesting that a combined multiplexed marker profiling and a functional 3D co-culture assay may help to explore predictive ICI response for HNSCC patients in the future. However, extensive studies with larger cohorts are warranted to validate and refine this approach.https://www.frontiersin.org/articles/10.3389/fonc.2025.1622008/fullhead and neck squamous cell carcinoma (HNSCC)immune checkpoint inhibitors (ICI)tumor microenvironment (TME)multiplexed immune profiling(patient-derived) organotypic slice co-culturepredictive biomarkers
spellingShingle Verena Schweihofer
Verena Schweihofer
Daniela Schulz
Daniela Schulz
Raquel Blazquez
Gero Brockhoff
Gero Brockhoff
Tobias Ettl
Tobias Ettl
Mathias Fiedler
Mathias Fiedler
Sina Heimer
Sina Heimer
Juliane Schikora
Richard J. Bauer
Richard J. Bauer
Anja Kathrin Wege
Anja Kathrin Wege
Multiplexed immune profiling and 3D co-culture assays to assess the individual checkpoint therapy response in head and neck squamous cell carcinoma
Frontiers in Oncology
head and neck squamous cell carcinoma (HNSCC)
immune checkpoint inhibitors (ICI)
tumor microenvironment (TME)
multiplexed immune profiling
(patient-derived) organotypic slice co-culture
predictive biomarkers
title Multiplexed immune profiling and 3D co-culture assays to assess the individual checkpoint therapy response in head and neck squamous cell carcinoma
title_full Multiplexed immune profiling and 3D co-culture assays to assess the individual checkpoint therapy response in head and neck squamous cell carcinoma
title_fullStr Multiplexed immune profiling and 3D co-culture assays to assess the individual checkpoint therapy response in head and neck squamous cell carcinoma
title_full_unstemmed Multiplexed immune profiling and 3D co-culture assays to assess the individual checkpoint therapy response in head and neck squamous cell carcinoma
title_short Multiplexed immune profiling and 3D co-culture assays to assess the individual checkpoint therapy response in head and neck squamous cell carcinoma
title_sort multiplexed immune profiling and 3d co culture assays to assess the individual checkpoint therapy response in head and neck squamous cell carcinoma
topic head and neck squamous cell carcinoma (HNSCC)
immune checkpoint inhibitors (ICI)
tumor microenvironment (TME)
multiplexed immune profiling
(patient-derived) organotypic slice co-culture
predictive biomarkers
url https://www.frontiersin.org/articles/10.3389/fonc.2025.1622008/full
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