Fine-tuning GBS data with comparison of reference and mock genome approaches for advancing genomic selection in less studied farmed species

Fine-tuning GBS data with comparison of reference and mock genome approaches for advancing genomic selection in less studied farmed species

Abstract Background Diversifying animal cultivation demands efficient genotyping for enabling genomic selection, but non-model species lack efficient genotyping solutions. The aim of this study was to optimize a genotyping-by-sequencing (GBS) double-digest RAD-sequencing (ddRAD) pipeline. Bovine dat...

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Bibliographic Details
Main Authors: Daniel Fischer, Miika Tapio, Oliver Bitz, Terhi Iso-Touru, Antti Kause, Ilma Tapio
Format: Article
Language:English
Published: BMC 2025-02-01
Series:BMC Genomics
Subjects:
Genotyping by sequencing
Snakemake
Variant calling
Cattle
Aquaculture
Repeatability
Online Access:https://doi.org/10.1186/s12864-025-11296-4
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https://doi.org/10.1186/s12864-025-11296-4

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