Mutations in Genes with a Role in Cell Envelope Biosynthesis Render Gram-Negative Bacteria Highly Susceptible to the Anti-Infective Small Molecule D66

Anti-infectives include molecules that target microbes in the context of infection but lack antimicrobial activity under conventional growth conditions. We previously described D66, a small molecule that kills the Gram-negative pathogen <i>Salmonella enterica</i> serovar Typhimurium (<...

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Main Authors: Samual C. Allgood, Calvin A. Ewing, Weiping Chu, Steffen Porwollik, Michael McClelland, Corrella S. Detweiler
Format: Article
Language:English
Published: MDPI AG 2025-06-01
Series:Microorganisms
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Online Access:https://www.mdpi.com/2076-2607/13/7/1521
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author Samual C. Allgood
Calvin A. Ewing
Weiping Chu
Steffen Porwollik
Michael McClelland
Corrella S. Detweiler
author_facet Samual C. Allgood
Calvin A. Ewing
Weiping Chu
Steffen Porwollik
Michael McClelland
Corrella S. Detweiler
author_sort Samual C. Allgood
collection DOAJ
description Anti-infectives include molecules that target microbes in the context of infection but lack antimicrobial activity under conventional growth conditions. We previously described D66, a small molecule that kills the Gram-negative pathogen <i>Salmonella enterica</i> serovar Typhimurium (<i>S.</i> Typhimurium) within cultured macrophages and murine tissues, with low host toxicity. While D66 fails to inhibit bacterial growth in standard media, the compound is bacteriostatic and disrupts the cell membrane voltage gradient without lysis under growth conditions that permeabilize the outer membrane or reduce efflux pump activity. To gain insights into specific bacterial targets of D66, we pursued two genetic approaches. Selection for resistance to D66 revealed spontaneous point mutations that mapped within the <i>gmhB</i> gene, which encodes a protein involved in the biosynthesis of the lipopolysaccharide core molecule. <i>E. coli</i> and <i>S.</i> Typhimurium <i>gmhB</i> mutants exhibited increased resistance to antibiotics, indicating a more robust barrier to entry. Conversely, <i>S.</i> Typhimurium transposon insertions in genes involved in outer membrane permeability or efflux pump activity reduced fitness in the presence of D66. Together, these observations underscore the significance of the bacterial cell envelope in safeguarding Gram-negative bacteria from small molecules.
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spelling doaj-art-f5754e1fc27c498ebc9aecdc396022022025-08-20T03:07:55ZengMDPI AGMicroorganisms2076-26072025-06-01137152110.3390/microorganisms13071521Mutations in Genes with a Role in Cell Envelope Biosynthesis Render Gram-Negative Bacteria Highly Susceptible to the Anti-Infective Small Molecule D66Samual C. Allgood0Calvin A. Ewing1Weiping Chu2Steffen Porwollik3Michael McClelland4Corrella S. Detweiler5Department of Molecular, Cellular and Developmental Biology, University of Colorado, Boulder, CO 80309, USADepartment of Molecular, Cellular and Developmental Biology, University of Colorado, Boulder, CO 80309, USADepartment of Microbiology and Molecular Genetics, University of California, Irvine, Irvine, CA 92697, USADepartment of Microbiology and Molecular Genetics, University of California, Irvine, Irvine, CA 92697, USADepartment of Microbiology and Molecular Genetics, University of California, Irvine, Irvine, CA 92697, USADepartment of Molecular, Cellular and Developmental Biology, University of Colorado, Boulder, CO 80309, USAAnti-infectives include molecules that target microbes in the context of infection but lack antimicrobial activity under conventional growth conditions. We previously described D66, a small molecule that kills the Gram-negative pathogen <i>Salmonella enterica</i> serovar Typhimurium (<i>S.</i> Typhimurium) within cultured macrophages and murine tissues, with low host toxicity. While D66 fails to inhibit bacterial growth in standard media, the compound is bacteriostatic and disrupts the cell membrane voltage gradient without lysis under growth conditions that permeabilize the outer membrane or reduce efflux pump activity. To gain insights into specific bacterial targets of D66, we pursued two genetic approaches. Selection for resistance to D66 revealed spontaneous point mutations that mapped within the <i>gmhB</i> gene, which encodes a protein involved in the biosynthesis of the lipopolysaccharide core molecule. <i>E. coli</i> and <i>S.</i> Typhimurium <i>gmhB</i> mutants exhibited increased resistance to antibiotics, indicating a more robust barrier to entry. Conversely, <i>S.</i> Typhimurium transposon insertions in genes involved in outer membrane permeability or efflux pump activity reduced fitness in the presence of D66. Together, these observations underscore the significance of the bacterial cell envelope in safeguarding Gram-negative bacteria from small molecules.https://www.mdpi.com/2076-2607/13/7/1521AcrAB-TolCanti-infectiveefflux pump<i>gmhB/yaeD</i>inner membranelipopolysaccharide (LPS)
spellingShingle Samual C. Allgood
Calvin A. Ewing
Weiping Chu
Steffen Porwollik
Michael McClelland
Corrella S. Detweiler
Mutations in Genes with a Role in Cell Envelope Biosynthesis Render Gram-Negative Bacteria Highly Susceptible to the Anti-Infective Small Molecule D66
Microorganisms
AcrAB-TolC
anti-infective
efflux pump
<i>gmhB/yaeD</i>
inner membrane
lipopolysaccharide (LPS)
title Mutations in Genes with a Role in Cell Envelope Biosynthesis Render Gram-Negative Bacteria Highly Susceptible to the Anti-Infective Small Molecule D66
title_full Mutations in Genes with a Role in Cell Envelope Biosynthesis Render Gram-Negative Bacteria Highly Susceptible to the Anti-Infective Small Molecule D66
title_fullStr Mutations in Genes with a Role in Cell Envelope Biosynthesis Render Gram-Negative Bacteria Highly Susceptible to the Anti-Infective Small Molecule D66
title_full_unstemmed Mutations in Genes with a Role in Cell Envelope Biosynthesis Render Gram-Negative Bacteria Highly Susceptible to the Anti-Infective Small Molecule D66
title_short Mutations in Genes with a Role in Cell Envelope Biosynthesis Render Gram-Negative Bacteria Highly Susceptible to the Anti-Infective Small Molecule D66
title_sort mutations in genes with a role in cell envelope biosynthesis render gram negative bacteria highly susceptible to the anti infective small molecule d66
topic AcrAB-TolC
anti-infective
efflux pump
<i>gmhB/yaeD</i>
inner membrane
lipopolysaccharide (LPS)
url https://www.mdpi.com/2076-2607/13/7/1521
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