ARK: Aggregation of Reads by K-Means for Estimation of Bacterial Community Composition.

ARK: Aggregation of Reads by K-Means for Estimation of Bacterial Community Composition.

<h4>Motivation</h4>Estimation of bacterial community composition from high-throughput sequenced 16S rRNA gene amplicons is a key task in microbial ecology. Since the sequence data from each sample typically consist of a large number of reads and are adversely impacted by different levels...

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Main Authors: David Koslicki, Saikat Chatterjee, Damon Shahrivar, Alan W Walker, Suzanna C Francis, Louise J Fraser, Mikko Vehkaperä, Yueheng Lan, Jukka Corander
Format: Article
Language:English
Published: Public Library of Science (PLoS) 2015-01-01
Series:PLoS ONE
Online Access:https://doi.org/10.1371/journal.pone.0140644
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https://doi.org/10.1371/journal.pone.0140644

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