Evaluation of kefir consumption on gut microbial diversity in a healthy young population using full-length 16S rRNA sequencing

IntroductionA balanced gut microbiota is essential for maintaining digestive, immune, and metabolic health. Kefir, a fermented milk beverage, influences gut microbiota through its probiotic composition and bioactive compounds, exhibiting various health-promoting effects. However, evidence on the eff...

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Main Authors: Yejin Choi, Gi Beom Keum, Juyoun Kang, Hyunok Doo, Jinok Kwak, Haram Kim, Yeongjae Chae, Suyoung Lee, Hyunjin Yang, Sheena Kim, Xingmin Sun, Hyeun Bum Kim, Soo Jin Yoo
Format: Article
Language:English
Published: Frontiers Media S.A. 2025-05-01
Series:Frontiers in Microbiology
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Online Access:https://www.frontiersin.org/articles/10.3389/fmicb.2025.1587831/full
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author Yejin Choi
Gi Beom Keum
Juyoun Kang
Hyunok Doo
Jinok Kwak
Haram Kim
Yeongjae Chae
Suyoung Lee
Hyunjin Yang
Sheena Kim
Xingmin Sun
Hyeun Bum Kim
Soo Jin Yoo
Soo Jin Yoo
author_facet Yejin Choi
Gi Beom Keum
Juyoun Kang
Hyunok Doo
Jinok Kwak
Haram Kim
Yeongjae Chae
Suyoung Lee
Hyunjin Yang
Sheena Kim
Xingmin Sun
Hyeun Bum Kim
Soo Jin Yoo
Soo Jin Yoo
author_sort Yejin Choi
collection DOAJ
description IntroductionA balanced gut microbiota is essential for maintaining digestive, immune, and metabolic health. Kefir, a fermented milk beverage, influences gut microbiota through its probiotic composition and bioactive compounds, exhibiting various health-promoting effects. However, evidence on the effects of kefir on gut microbiota, particularly in healthy populations, is still limited. This study aimed to elucidate the effects of kefir on gut microbiota composition in healthy young adults under a controlled dietary environment.MethodsIn this randomized, controlled, parallel-group trial, 28 healthy participants aged 18–30 years were assigned to one of three groups: kefir (n = 13), unfermented milk (n = 9), and yogurt (n = 6). Participants consumed 150 mL of their assigned beverage daily for 2 weeks. Stool samples were collected before and after the intervention to analyze gut microbiota composition using 16S rRNA sequencing.ResultsKefir consumption increased the relative abundance of lactate-producing bacteria, including Bifidobacterium breve, Ruthenibacterium lactatiformans, Weissella koreensis, and Leuconostoc mesenteroides. The genus Blautia also increased, with significant changes observed in Blautia luti and Blautia wexlerae. These shifts in species abundance were associated with increases in the short-chain fatty acid (SCFA) production pathway.DiscussionIn summary, this study highlights kefir's potential to modulate gut microbiota composition in healthy individuals, emphasizing its role in supporting gut health.
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spelling doaj-art-cffda0aeebc9441192f7ac1dd9d300a32025-08-20T02:33:20ZengFrontiers Media S.A.Frontiers in Microbiology1664-302X2025-05-011610.3389/fmicb.2025.15878311587831Evaluation of kefir consumption on gut microbial diversity in a healthy young population using full-length 16S rRNA sequencingYejin Choi0Gi Beom Keum1Juyoun Kang2Hyunok Doo3Jinok Kwak4Haram Kim5Yeongjae Chae6Suyoung Lee7Hyunjin Yang8Sheena Kim9Xingmin Sun10Hyeun Bum Kim11Soo Jin Yoo12Soo Jin Yoo13Departement of Animal Biotechnology, Dankook University, Chenonan-si, Republic of KoreaDepartement of Animal Biotechnology, Dankook University, Chenonan-si, Republic of KoreaDepartement of Animal Biotechnology, Dankook University, Chenonan-si, Republic of KoreaDepartement of Animal Biotechnology, Dankook University, Chenonan-si, Republic of KoreaDepartement of Animal Biotechnology, Dankook University, Chenonan-si, Republic of KoreaDepartement of Animal Biotechnology, Dankook University, Chenonan-si, Republic of KoreaDepartement of Animal Biotechnology, Dankook University, Chenonan-si, Republic of KoreaDepartement of Animal Biotechnology, Dankook University, Chenonan-si, Republic of KoreaDepartement of Animal Biotechnology, Dankook University, Chenonan-si, Republic of KoreaDepartement of Animal Biotechnology, Dankook University, Chenonan-si, Republic of KoreaDepartment of Molecular Medicine, Morsani College of Medicine, University of South Florida, Tampa, FL, United StatesDepartement of Animal Biotechnology, Dankook University, Chenonan-si, Republic of KoreaDepartment of Laboratory Medicine, Sanggye Paik Hospital, Inje University, Seoul, Republic of KoreaDepartment of Laboratory Medicine, Uijeongbu Eulji Medical Center, Eulji University, Uijeongbu, Republic of KoreaIntroductionA balanced gut microbiota is essential for maintaining digestive, immune, and metabolic health. Kefir, a fermented milk beverage, influences gut microbiota through its probiotic composition and bioactive compounds, exhibiting various health-promoting effects. However, evidence on the effects of kefir on gut microbiota, particularly in healthy populations, is still limited. This study aimed to elucidate the effects of kefir on gut microbiota composition in healthy young adults under a controlled dietary environment.MethodsIn this randomized, controlled, parallel-group trial, 28 healthy participants aged 18–30 years were assigned to one of three groups: kefir (n = 13), unfermented milk (n = 9), and yogurt (n = 6). Participants consumed 150 mL of their assigned beverage daily for 2 weeks. Stool samples were collected before and after the intervention to analyze gut microbiota composition using 16S rRNA sequencing.ResultsKefir consumption increased the relative abundance of lactate-producing bacteria, including Bifidobacterium breve, Ruthenibacterium lactatiformans, Weissella koreensis, and Leuconostoc mesenteroides. The genus Blautia also increased, with significant changes observed in Blautia luti and Blautia wexlerae. These shifts in species abundance were associated with increases in the short-chain fatty acid (SCFA) production pathway.DiscussionIn summary, this study highlights kefir's potential to modulate gut microbiota composition in healthy individuals, emphasizing its role in supporting gut health.https://www.frontiersin.org/articles/10.3389/fmicb.2025.1587831/fullkefirshort-chain fatty acids (SCFAs)16S rRNA sequencingprobioticsgut healthhealthy young adult
spellingShingle Yejin Choi
Gi Beom Keum
Juyoun Kang
Hyunok Doo
Jinok Kwak
Haram Kim
Yeongjae Chae
Suyoung Lee
Hyunjin Yang
Sheena Kim
Xingmin Sun
Hyeun Bum Kim
Soo Jin Yoo
Soo Jin Yoo
Evaluation of kefir consumption on gut microbial diversity in a healthy young population using full-length 16S rRNA sequencing
Frontiers in Microbiology
kefir
short-chain fatty acids (SCFAs)
16S rRNA sequencing
probiotics
gut health
healthy young adult
title Evaluation of kefir consumption on gut microbial diversity in a healthy young population using full-length 16S rRNA sequencing
title_full Evaluation of kefir consumption on gut microbial diversity in a healthy young population using full-length 16S rRNA sequencing
title_fullStr Evaluation of kefir consumption on gut microbial diversity in a healthy young population using full-length 16S rRNA sequencing
title_full_unstemmed Evaluation of kefir consumption on gut microbial diversity in a healthy young population using full-length 16S rRNA sequencing
title_short Evaluation of kefir consumption on gut microbial diversity in a healthy young population using full-length 16S rRNA sequencing
title_sort evaluation of kefir consumption on gut microbial diversity in a healthy young population using full length 16s rrna sequencing
topic kefir
short-chain fatty acids (SCFAs)
16S rRNA sequencing
probiotics
gut health
healthy young adult
url https://www.frontiersin.org/articles/10.3389/fmicb.2025.1587831/full
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