Eukaryotic DNAJ/K Database: A Comprehensive Phylogenomic Analysis Platform for the DNAJ/K Family
Proteins in DNAJ/K families are ubiquitous, from prokaryotes to eukaryotes, and function as molecular chaperones. For systematic phylogenomics of the DNAJ/K families, we developed the Eukaryotic DNAJ/K Database (EDD). A total of 12,908 DNAJs and 4,886 DNAKs were identified from 339 eukaryotic genome...
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| Format: | Article |
| Language: | English |
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BioMed Central
2013-03-01
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| Series: | Genomics & Informatics |
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| Online Access: | http://genominfo.org/upload/pdf/gni-11-52.pdf |
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| author | Kyeongchae Cheong Jaehyuk Choi Jaeyoung Choi Jongsun Park Suwang Jang Yong-Hwan Lee |
| author_facet | Kyeongchae Cheong Jaehyuk Choi Jaeyoung Choi Jongsun Park Suwang Jang Yong-Hwan Lee |
| author_sort | Kyeongchae Cheong |
| collection | DOAJ |
| description | Proteins in DNAJ/K families are ubiquitous, from prokaryotes to eukaryotes, and function as molecular chaperones. For systematic phylogenomics of the DNAJ/K families, we developed the Eukaryotic DNAJ/K Database (EDD). A total of 12,908 DNAJs and 4,886 DNAKs were identified from 339 eukaryotic genomes in the EDD. Kingdom-wide comparison of DNAJ/K families provides new insights on the evolutionary relationship within these families. Empowered by 'class', 'cluster', and 'taxonomy' browsers and the 'favorite' function, the EDD provides a versatile platform for comparative genomic analyses of DNAJ/K families. |
| format | Article |
| id | doaj-art-b504cf408f3e4e23b213a68c645fca65 |
| institution | Kabale University |
| issn | 1598-866X 2234-0742 |
| language | English |
| publishDate | 2013-03-01 |
| publisher | BioMed Central |
| record_format | Article |
| series | Genomics & Informatics |
| spelling | doaj-art-b504cf408f3e4e23b213a68c645fca652025-02-02T07:29:15ZengBioMed CentralGenomics & Informatics1598-866X2234-07422013-03-01111525410.5808/GI.2013.11.1.5281Eukaryotic DNAJ/K Database: A Comprehensive Phylogenomic Analysis Platform for the DNAJ/K FamilyKyeongchae Cheong0Jaehyuk Choi1Jaeyoung Choi2Jongsun Park3Suwang Jang4Yong-Hwan Lee5Fungal Bioinformatics Laboratory, Seoul National University, Seoul 151-921, Korea.Center for Fungal Pathogenesis, Seoul National University, Seoul 151-921, Korea.Fungal Bioinformatics Laboratory, Seoul National University, Seoul 151-921, Korea.Fungal Bioinformatics Laboratory, Seoul National University, Seoul 151-921, Korea.Fungal Bioinformatics Laboratory, Seoul National University, Seoul 151-921, Korea.Fungal Bioinformatics Laboratory, Seoul National University, Seoul 151-921, Korea.Proteins in DNAJ/K families are ubiquitous, from prokaryotes to eukaryotes, and function as molecular chaperones. For systematic phylogenomics of the DNAJ/K families, we developed the Eukaryotic DNAJ/K Database (EDD). A total of 12,908 DNAJs and 4,886 DNAKs were identified from 339 eukaryotic genomes in the EDD. Kingdom-wide comparison of DNAJ/K families provides new insights on the evolutionary relationship within these families. Empowered by 'class', 'cluster', and 'taxonomy' browsers and the 'favorite' function, the EDD provides a versatile platform for comparative genomic analyses of DNAJ/K families.http://genominfo.org/upload/pdf/gni-11-52.pdfdatabaseHSP40 heat-shock proteinsHSP70 heat-shock proteins |
| spellingShingle | Kyeongchae Cheong Jaehyuk Choi Jaeyoung Choi Jongsun Park Suwang Jang Yong-Hwan Lee Eukaryotic DNAJ/K Database: A Comprehensive Phylogenomic Analysis Platform for the DNAJ/K Family Genomics & Informatics database HSP40 heat-shock proteins HSP70 heat-shock proteins |
| title | Eukaryotic DNAJ/K Database: A Comprehensive Phylogenomic Analysis Platform for the DNAJ/K Family |
| title_full | Eukaryotic DNAJ/K Database: A Comprehensive Phylogenomic Analysis Platform for the DNAJ/K Family |
| title_fullStr | Eukaryotic DNAJ/K Database: A Comprehensive Phylogenomic Analysis Platform for the DNAJ/K Family |
| title_full_unstemmed | Eukaryotic DNAJ/K Database: A Comprehensive Phylogenomic Analysis Platform for the DNAJ/K Family |
| title_short | Eukaryotic DNAJ/K Database: A Comprehensive Phylogenomic Analysis Platform for the DNAJ/K Family |
| title_sort | eukaryotic dnaj k database a comprehensive phylogenomic analysis platform for the dnaj k family |
| topic | database HSP40 heat-shock proteins HSP70 heat-shock proteins |
| url | http://genominfo.org/upload/pdf/gni-11-52.pdf |
| work_keys_str_mv | AT kyeongchaecheong eukaryoticdnajkdatabaseacomprehensivephylogenomicanalysisplatformforthednajkfamily AT jaehyukchoi eukaryoticdnajkdatabaseacomprehensivephylogenomicanalysisplatformforthednajkfamily AT jaeyoungchoi eukaryoticdnajkdatabaseacomprehensivephylogenomicanalysisplatformforthednajkfamily AT jongsunpark eukaryoticdnajkdatabaseacomprehensivephylogenomicanalysisplatformforthednajkfamily AT suwangjang eukaryoticdnajkdatabaseacomprehensivephylogenomicanalysisplatformforthednajkfamily AT yonghwanlee eukaryoticdnajkdatabaseacomprehensivephylogenomicanalysisplatformforthednajkfamily |