Eukaryotic DNAJ/K Database: A Comprehensive Phylogenomic Analysis Platform for the DNAJ/K Family

Proteins in DNAJ/K families are ubiquitous, from prokaryotes to eukaryotes, and function as molecular chaperones. For systematic phylogenomics of the DNAJ/K families, we developed the Eukaryotic DNAJ/K Database (EDD). A total of 12,908 DNAJs and 4,886 DNAKs were identified from 339 eukaryotic genome...

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Main Authors: Kyeongchae Cheong, Jaehyuk Choi, Jaeyoung Choi, Jongsun Park, Suwang Jang, Yong-Hwan Lee
Format: Article
Language:English
Published: BioMed Central 2013-03-01
Series:Genomics & Informatics
Subjects:
Online Access:http://genominfo.org/upload/pdf/gni-11-52.pdf
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author Kyeongchae Cheong
Jaehyuk Choi
Jaeyoung Choi
Jongsun Park
Suwang Jang
Yong-Hwan Lee
author_facet Kyeongchae Cheong
Jaehyuk Choi
Jaeyoung Choi
Jongsun Park
Suwang Jang
Yong-Hwan Lee
author_sort Kyeongchae Cheong
collection DOAJ
description Proteins in DNAJ/K families are ubiquitous, from prokaryotes to eukaryotes, and function as molecular chaperones. For systematic phylogenomics of the DNAJ/K families, we developed the Eukaryotic DNAJ/K Database (EDD). A total of 12,908 DNAJs and 4,886 DNAKs were identified from 339 eukaryotic genomes in the EDD. Kingdom-wide comparison of DNAJ/K families provides new insights on the evolutionary relationship within these families. Empowered by 'class', 'cluster', and 'taxonomy' browsers and the 'favorite' function, the EDD provides a versatile platform for comparative genomic analyses of DNAJ/K families.
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institution Kabale University
issn 1598-866X
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language English
publishDate 2013-03-01
publisher BioMed Central
record_format Article
series Genomics & Informatics
spelling doaj-art-b504cf408f3e4e23b213a68c645fca652025-02-02T07:29:15ZengBioMed CentralGenomics & Informatics1598-866X2234-07422013-03-01111525410.5808/GI.2013.11.1.5281Eukaryotic DNAJ/K Database: A Comprehensive Phylogenomic Analysis Platform for the DNAJ/K FamilyKyeongchae Cheong0Jaehyuk Choi1Jaeyoung Choi2Jongsun Park3Suwang Jang4Yong-Hwan Lee5Fungal Bioinformatics Laboratory, Seoul National University, Seoul 151-921, Korea.Center for Fungal Pathogenesis, Seoul National University, Seoul 151-921, Korea.Fungal Bioinformatics Laboratory, Seoul National University, Seoul 151-921, Korea.Fungal Bioinformatics Laboratory, Seoul National University, Seoul 151-921, Korea.Fungal Bioinformatics Laboratory, Seoul National University, Seoul 151-921, Korea.Fungal Bioinformatics Laboratory, Seoul National University, Seoul 151-921, Korea.Proteins in DNAJ/K families are ubiquitous, from prokaryotes to eukaryotes, and function as molecular chaperones. For systematic phylogenomics of the DNAJ/K families, we developed the Eukaryotic DNAJ/K Database (EDD). A total of 12,908 DNAJs and 4,886 DNAKs were identified from 339 eukaryotic genomes in the EDD. Kingdom-wide comparison of DNAJ/K families provides new insights on the evolutionary relationship within these families. Empowered by 'class', 'cluster', and 'taxonomy' browsers and the 'favorite' function, the EDD provides a versatile platform for comparative genomic analyses of DNAJ/K families.http://genominfo.org/upload/pdf/gni-11-52.pdfdatabaseHSP40 heat-shock proteinsHSP70 heat-shock proteins
spellingShingle Kyeongchae Cheong
Jaehyuk Choi
Jaeyoung Choi
Jongsun Park
Suwang Jang
Yong-Hwan Lee
Eukaryotic DNAJ/K Database: A Comprehensive Phylogenomic Analysis Platform for the DNAJ/K Family
Genomics & Informatics
database
HSP40 heat-shock proteins
HSP70 heat-shock proteins
title Eukaryotic DNAJ/K Database: A Comprehensive Phylogenomic Analysis Platform for the DNAJ/K Family
title_full Eukaryotic DNAJ/K Database: A Comprehensive Phylogenomic Analysis Platform for the DNAJ/K Family
title_fullStr Eukaryotic DNAJ/K Database: A Comprehensive Phylogenomic Analysis Platform for the DNAJ/K Family
title_full_unstemmed Eukaryotic DNAJ/K Database: A Comprehensive Phylogenomic Analysis Platform for the DNAJ/K Family
title_short Eukaryotic DNAJ/K Database: A Comprehensive Phylogenomic Analysis Platform for the DNAJ/K Family
title_sort eukaryotic dnaj k database a comprehensive phylogenomic analysis platform for the dnaj k family
topic database
HSP40 heat-shock proteins
HSP70 heat-shock proteins
url http://genominfo.org/upload/pdf/gni-11-52.pdf
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