Data‐driven guidelines for phylogenomic analyses using SNP data

Data‐driven guidelines for phylogenomic analyses using SNP data

Abstract Premise There is a general lack of consensus on the best practices for filtering of single‐nucleotide polymorphisms (SNPs) and whether it is better to use SNPs or include flanking regions (full “locus”) in phylogenomic analyses and subsequent comparative methods. Methods Using genotyping‐by...

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Bibliographic Details
Main Authors: Jacob S. Suissa, Gisel Y. De La Cerda, Leland C. Graber, Chloe Jelley, David Wickell, Heather R. Phillips, Ayress D. Grinage, Corrie S. Moreau, Chelsea D. Specht, Jeff J. Doyle, Jacob B. Landis
Format: Article
Language:English
Published: Wiley 2024-11-01
Series:Applications in Plant Sciences
Subjects:
ancestral state reconstructions
divergence time estimation
genotyping‐by‐sequencing (GBS)
Glycine
locus
phylogenetic comparative methods
Online Access:https://doi.org/10.1002/aps3.11611
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https://doi.org/10.1002/aps3.11611

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