Context-Aware Gene Embedding Pipeline (CGEP): An Accessible, Regulatory-Region-Inclusive Embedding Framework for Interpretable Disease-Agnostic Prediction

Context-Aware Gene Embedding Pipeline (CGEP): An Accessible, Regulatory-Region-Inclusive Embedding Framework for Interpretable Disease-Agnostic Prediction

In this study, we propose a novel Gene Embedding Pipeline (CGEP) designed to address critical limitations in genomic deep learning by integrating both functional and regulatory genomic contexts. Unlike conventional approaches, our framework prioritizes disease-associated genes identified through con...

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Bibliographic Details
Main Authors: Twaha Ahmed Minai, Zubair Ahmed Shaikh, Asim Imdad Wagan, M. Kamran Azim, Syed Muhammad Muaz, Muhammad Shoaib Siddiqui
Format: Article
Language:English
Published: IEEE 2025-01-01
Series:IEEE Access
Subjects:
Context-aware gene embedding pipeline (CGEP)
DNA embedding
upstream
downstream
gene embedding
breast cancer
Online Access:https://ieeexplore.ieee.org/document/11048558/
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https://ieeexplore.ieee.org/document/11048558/

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