Characterization of a heme-degrading enzyme that mediates fitness and pathogenicity in Enterococcus faecalis

ABSTRACT Enterococcus faecalis, a gut commensal, is a leading cause of opportunistic infections. Its virulence is linked to its ability to thrive in hostile environments, which includes host-imposed metal starvation. We recently showed that E. faecalis evades iron starvation using five dedicated tra...

Full description

Saved in:
Bibliographic Details
Main Authors: Debra N. Brunson, Haider Manzer, Alexander B. Smith, Joseph P. Zackular, Todd Kitten, José A. Lemos
Format: Article
Language:English
Published: American Society for Microbiology 2025-05-01
Series:mBio
Subjects:
Online Access:https://journals.asm.org/doi/10.1128/mbio.00146-25
Tags: Add Tag
No Tags, Be the first to tag this record!
_version_ 1850030990435549184
author Debra N. Brunson
Haider Manzer
Alexander B. Smith
Joseph P. Zackular
Todd Kitten
José A. Lemos
author_facet Debra N. Brunson
Haider Manzer
Alexander B. Smith
Joseph P. Zackular
Todd Kitten
José A. Lemos
author_sort Debra N. Brunson
collection DOAJ
description ABSTRACT Enterococcus faecalis, a gut commensal, is a leading cause of opportunistic infections. Its virulence is linked to its ability to thrive in hostile environments, which includes host-imposed metal starvation. We recently showed that E. faecalis evades iron starvation using five dedicated transporters that collectively scavenge iron from host tissues. Interestingly, heme, the most abundant source of iron in the human body, supported the growth of a strain lacking all five iron transporters (Δ5Fe). To release iron from heme, many bacterial pathogens utilize heme oxygenase enzymes to degrade the porphyrin ring that coordinates the iron ion of heme. Although E. faecalis lacks these enzymes, bioinformatics revealed a potential ortholog of the anaerobic heme-degrading enzyme anaerobilin synthase, found in Escherichia coli and a few other gram-negative bacteria. Here, we demonstrated that deletion of OG1RF_RS05575 in E. faecalis (ΔRS05575) or in the Δ5Fe background (Δ5FeΔRS05575) led to intracellular heme accumulation and hypersensitivity under anaerobic conditions, suggesting RS05575 encodes an anaerobilin synthase, the first of its kind described in gram-positive bacteria. Additionally, deletion of RS05575, either alone or in the Δ5Fe background, impaired E. faecalis colonization in the mouse gastrointestinal tract and virulence in mouse peritonitis and rabbit infective endocarditis models. These results support the proposal that RS05575 is responsible for the anaerobic degradation of heme and identifies this relatively new enzyme class as a novel factor in bacterial pathogenesis. The findings from this study are likely to have broad implications, as homologues of RS05575 are found in other gram-positive facultative anaerobes.IMPORTANCEHeme is an important nutrient for bacterial pathogens, mainly for its ability to serve as an iron source during infection. While bacteria are known to release iron from heme using enzymes called heme oxygenases, a new family of anaerobic heme-degrading enzymes has been described recently in gram-negative bacteria. Here, we report the first description of anaerobic heme degradation by a gram-positive bacterium, the opportunistic pathogen Enterococcus faecalis, and link activity of this enzyme to their ability to colonize and infect the host. We also show that homologs of this enzyme are found in many gram-positive facultative anaerobes, implying that the ability to degrade heme under anaerobic conditions may be an overlooked fitness and virulence factor of bacterial pathogens.
format Article
id doaj-art-a01707d5f9a14ad99c858722bc9ff1e7
institution DOAJ
issn 2150-7511
language English
publishDate 2025-05-01
publisher American Society for Microbiology
record_format Article
series mBio
spelling doaj-art-a01707d5f9a14ad99c858722bc9ff1e72025-08-20T02:59:04ZengAmerican Society for MicrobiologymBio2150-75112025-05-0116510.1128/mbio.00146-25Characterization of a heme-degrading enzyme that mediates fitness and pathogenicity in Enterococcus faecalisDebra N. Brunson0Haider Manzer1Alexander B. Smith2Joseph P. Zackular3Todd Kitten4José A. Lemos5Department of Oral Biology, University of Florida College of Dentistry, Gainesville, Florida, USADivision of Protective Immunity, Children’s Hospital of Philadelphia, Philadelphia, Pennsylvania, USADivision of Protective Immunity, Children’s Hospital of Philadelphia, Philadelphia, Pennsylvania, USADivision of Protective Immunity, Children’s Hospital of Philadelphia, Philadelphia, Pennsylvania, USADepartment of Oral and Craniofacial Molecular Biology, Philips Institute for Oral Health Research, School of Dentistry, Virginia Commonwealth University, Richmond, Virginia, USADepartment of Oral Biology, University of Florida College of Dentistry, Gainesville, Florida, USAABSTRACT Enterococcus faecalis, a gut commensal, is a leading cause of opportunistic infections. Its virulence is linked to its ability to thrive in hostile environments, which includes host-imposed metal starvation. We recently showed that E. faecalis evades iron starvation using five dedicated transporters that collectively scavenge iron from host tissues. Interestingly, heme, the most abundant source of iron in the human body, supported the growth of a strain lacking all five iron transporters (Δ5Fe). To release iron from heme, many bacterial pathogens utilize heme oxygenase enzymes to degrade the porphyrin ring that coordinates the iron ion of heme. Although E. faecalis lacks these enzymes, bioinformatics revealed a potential ortholog of the anaerobic heme-degrading enzyme anaerobilin synthase, found in Escherichia coli and a few other gram-negative bacteria. Here, we demonstrated that deletion of OG1RF_RS05575 in E. faecalis (ΔRS05575) or in the Δ5Fe background (Δ5FeΔRS05575) led to intracellular heme accumulation and hypersensitivity under anaerobic conditions, suggesting RS05575 encodes an anaerobilin synthase, the first of its kind described in gram-positive bacteria. Additionally, deletion of RS05575, either alone or in the Δ5Fe background, impaired E. faecalis colonization in the mouse gastrointestinal tract and virulence in mouse peritonitis and rabbit infective endocarditis models. These results support the proposal that RS05575 is responsible for the anaerobic degradation of heme and identifies this relatively new enzyme class as a novel factor in bacterial pathogenesis. The findings from this study are likely to have broad implications, as homologues of RS05575 are found in other gram-positive facultative anaerobes.IMPORTANCEHeme is an important nutrient for bacterial pathogens, mainly for its ability to serve as an iron source during infection. While bacteria are known to release iron from heme using enzymes called heme oxygenases, a new family of anaerobic heme-degrading enzymes has been described recently in gram-negative bacteria. Here, we report the first description of anaerobic heme degradation by a gram-positive bacterium, the opportunistic pathogen Enterococcus faecalis, and link activity of this enzyme to their ability to colonize and infect the host. We also show that homologs of this enzyme are found in many gram-positive facultative anaerobes, implying that the ability to degrade heme under anaerobic conditions may be an overlooked fitness and virulence factor of bacterial pathogens.https://journals.asm.org/doi/10.1128/mbio.00146-25heme degradationenterococcifacultative anaerobeEnterococcus faecalismetal homeostasisvirulence factors
spellingShingle Debra N. Brunson
Haider Manzer
Alexander B. Smith
Joseph P. Zackular
Todd Kitten
José A. Lemos
Characterization of a heme-degrading enzyme that mediates fitness and pathogenicity in Enterococcus faecalis
mBio
heme degradation
enterococci
facultative anaerobe
Enterococcus faecalis
metal homeostasis
virulence factors
title Characterization of a heme-degrading enzyme that mediates fitness and pathogenicity in Enterococcus faecalis
title_full Characterization of a heme-degrading enzyme that mediates fitness and pathogenicity in Enterococcus faecalis
title_fullStr Characterization of a heme-degrading enzyme that mediates fitness and pathogenicity in Enterococcus faecalis
title_full_unstemmed Characterization of a heme-degrading enzyme that mediates fitness and pathogenicity in Enterococcus faecalis
title_short Characterization of a heme-degrading enzyme that mediates fitness and pathogenicity in Enterococcus faecalis
title_sort characterization of a heme degrading enzyme that mediates fitness and pathogenicity in enterococcus faecalis
topic heme degradation
enterococci
facultative anaerobe
Enterococcus faecalis
metal homeostasis
virulence factors
url https://journals.asm.org/doi/10.1128/mbio.00146-25
work_keys_str_mv AT debranbrunson characterizationofahemedegradingenzymethatmediatesfitnessandpathogenicityinenterococcusfaecalis
AT haidermanzer characterizationofahemedegradingenzymethatmediatesfitnessandpathogenicityinenterococcusfaecalis
AT alexanderbsmith characterizationofahemedegradingenzymethatmediatesfitnessandpathogenicityinenterococcusfaecalis
AT josephpzackular characterizationofahemedegradingenzymethatmediatesfitnessandpathogenicityinenterococcusfaecalis
AT toddkitten characterizationofahemedegradingenzymethatmediatesfitnessandpathogenicityinenterococcusfaecalis
AT josealemos characterizationofahemedegradingenzymethatmediatesfitnessandpathogenicityinenterococcusfaecalis