ONTraC characterizes spatially continuous variations of tissue microenvironment through niche trajectory analysis

Abstract Recent technological advances enable mapping of tissue spatial organization at single-cell resolution, but methods for analyzing spatially continuous microenvironments are still lacking. We introduce ONTraC, a graph neural network-based framework for constructing spatial trajectories at nic...

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Bibliographic Details
Main Authors: Wen Wang, Shiwei Zheng, Sujung Crystal Shin, Joselyn Cristina Chávez-Fuentes, Guo-Cheng Yuan
Format: Article
Language:English
Published: BMC 2025-05-01
Series:Genome Biology
Online Access:https://doi.org/10.1186/s13059-025-03588-5
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