Reference-informed evaluation of batch correction for single-cell omics data with overcorrection awareness

Abstract Batch effect correction (BEC) is fundamental to integrate multiple single-cell RNA sequencing datasets, and its success is critical to empower in-depth interrogation for biological insights. However, no simple metric is available to evaluate BEC performance with sensitivity to data overcorr...

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Bibliographic Details
Main Authors: Xiaoyue Hu, He Li, Ming Chen, Junbin Qian, Hangjin Jiang
Format: Article
Language:English
Published: Nature Portfolio 2025-03-01
Series:Communications Biology
Online Access:https://doi.org/10.1038/s42003-025-07947-7
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