CNRein: an evolution-aware deep reinforcement learning algorithm for single-cell DNA copy number calling

Abstract Low-pass single-cell DNA sequencing technologies and algorithmic advancements have enabled haplotype-specific copy number calling on thousands of cells within tumors. However, measurement uncertainty may result in spurious CNAs inconsistent with realistic evolutionary constraints. We introd...

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Bibliographic Details
Main Authors: Stefan Ivanovic, Mohammed El-Kebir
Format: Article
Language:English
Published: BMC 2025-04-01
Series:Genome Biology
Online Access:https://doi.org/10.1186/s13059-025-03553-2
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