Combining Short- and Long-Read Sequencing Technologies to Identify SARS-CoV-2 Variants in Wastewater

Combining Short- and Long-Read Sequencing Technologies to Identify SARS-CoV-2 Variants in Wastewater

During the COVID-19 pandemic, the monitoring of SARS-CoV-2 RNA in wastewater was used to track the evolution and emergence of variant lineages and gauge infection levels in the community, informing appropriate public health responses without relying solely on clinical testing. As more sublineages we...

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Main Authors: Gabrielle Jayme, Ju-Ling Liu, Jose Hector Galvez, Sarah Julia Reiling, Sukriye Celikkol, Arnaud N’Guessan, Sally Lee, Shu-Huang Chen, Alexandra Tsitouras, Fernando Sanchez-Quete, Thomas Maere, Eyerusalem Goitom, Mounia Hachad, Elisabeth Mercier, Stephanie Katharine Loeb, Peter A. Vanrolleghem, Sarah Dorner, Robert Delatolla, B. Jesse Shapiro, Dominic Frigon, Jiannis Ragoussis, Terrance P. Snutch
Format: Article
Language:English
Published: MDPI AG 2024-09-01
Series:Viruses
Subjects:
SARS-CoV-2
coronaviruses
variants
wastewater surveillance
Illumina sequencing
Nanopore sequencing
Online Access:https://www.mdpi.com/1999-4915/16/9/1495
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