Comprehensive analysis of repetitive extragenic palindrome sequences identified in bacteria and archaea using a new web-based tool, RepRanger

Comprehensive analysis of repetitive extragenic palindrome sequences identified in bacteria and archaea using a new web-based tool, RepRanger

ABSTRACT Repetitive extragenic palindromic (REP) sequences were first discovered in the intergenic regions of Escherichia coli and later found in phylogenetically distinct bacterial species. However, their biological roles and sequence conservation remain unclear. Considering the growing number of m...

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Bibliographic Details
Main Authors: Oleg N. Murashko, Connor Morgan-Lang, Chen-Hsin Albert Yu, Hsin-Nan Lin, Anna Chao Kaberdina, Shin-Yu Kung, Vladimir R. Kaberdin, Sue Lin-Chao
Format: Article
Language:English
Published: American Society for Microbiology 2025-07-01
Series:mSphere
Subjects:
palindromic element
extragenic repetitive sequences
consensus motif
small noncoding RNA
post-transcriptional regulation
Online Access:https://journals.asm.org/doi/10.1128/msphere.00124-25
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https://journals.asm.org/doi/10.1128/msphere.00124-25

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