Assessing and improving reliability of neighbor embedding methods: a map-continuity perspective

Abstract Visualizing high-dimensional data is essential for understanding biomedical data and deep learning models. Neighbor embedding methods, such as t-SNE and UMAP, are widely used but can introduce misleading visual artifacts. We find that the manifold learning interpretations from many prior wo...

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Bibliographic Details
Main Authors: Zhexuan Liu, Rong Ma, Yiqiao Zhong
Format: Article
Language:English
Published: Nature Portfolio 2025-05-01
Series:Nature Communications
Online Access:https://doi.org/10.1038/s41467-025-60434-9
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