Learning-based parallel acceleration for HaplotypeCaller

Abstract In the genome analysis workflow, Genome Analysis Toolkit (GATK) HaplotypeCaller is a widely used variant calling tool designed to accurately identify single nucleotide polymorphisms (SNPs) and insertions/deletions (Indels) in samples. However, when processing large-scale datasets, Haplotype...

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Bibliographic Details
Main Authors: Xiangxing Lai, Minguang Xiao, Lingling Weng, Zhiguang Chen
Format: Article
Language:English
Published: BMC 2025-08-01
Series:BMC Bioinformatics
Subjects:
Online Access:https://doi.org/10.1186/s12859-025-06242-w
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