HPD-Kit: a comprehensive toolkit for pathogen detection and analysis

HPD-Kit: a comprehensive toolkit for pathogen detection and analysis

IntroductionUnbiased metagenomic sequencing (mNGS) is crucial for infectious disease diagnosis and epidemiological surveillance. However, its analysis requires specialized bioinformatics skills, creating barriers for clinicians. We developed HPD-Kit (Henbio Pathogen Detection Toolkit) with an integr...

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Main Authors: Tengcheng Que, Wen Li, Zhining Zhang, Yunlin He, Kangming He, Hong Qiu, Juan Huang, Zhiwei Lu, Chunlan Jiang, Yongjian Huang, Hui Huang, Qiuyu Wu, Panyu Chen, Yanling Hu, Wenjian Liu
Format: Article
Language:English
Published: Frontiers Media S.A. 2025-05-01
Series:Frontiers in Cellular and Infection Microbiology
Subjects:
pathogen detection
bioinformatics pipeline
HPD-Kit
multi-method alignment
NPAs
Online Access:https://www.frontiersin.org/articles/10.3389/fcimb.2025.1580165/full
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https://www.frontiersin.org/articles/10.3389/fcimb.2025.1580165/full

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