tomoseqr: A Bioconductor package for spatial reconstruction and visualization of 3D gene expression patterns based on RNA tomography

tomoseqr: A Bioconductor package for spatial reconstruction and visualization of 3D gene expression patterns based on RNA tomography

Show other versions (1)

Saved in:

Bibliographic Details
Main Authors:	Ryosuke Matsuzawa, Daichi Kawahara, Makoto Kashima, Hiromi Hirata, Haruka Ozaki
Format:	Article
Language:	English
Published:	Public Library of Science (PLoS) 2025-01-01
Series:	PLoS ONE
Online Access:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11709299/?tool=EBI
Tags:	Add Tag No Tags, Be the first to tag this record!

Similar Items

tomoseqr: A Bioconductor package for spatial reconstruction and visualization of 3D gene expression patterns based on RNA tomography.
by: Ryosuke Matsuzawa, et al.
Published: (2025-01-01)

A ChIP-Seq Data Analysis Pipeline Based on Bioconductor Packages
by: Seung-Jin Park, et al.
Published: (2017-03-01)

TRAPR: R Package for Statistical Analysis and Visualization of RNA-Seq Data
by: Jae Hyun Lim, et al.
Published: (2017-03-01)

VIBE: an R-package for VIsualization of Bulk RNA Expression data for therapeutic targeting and disease stratification
by: Indu Khatri, et al.
Published: (2025-01-01)

Sparse-Coding-Based Computed Tomography Image Reconstruction
by: Sang Min Yoon, et al.
Published: (2013-01-01)

Neural-field-based image reconstruction for bioluminescence tomography
by: Xuanxuan Zhang, et al.
Published: (2025-01-01)

['THREE-DIMENSIONAL RECONSTRUCTION AND VISUALIZATION OF PLANT CELLS']
by: Sharifa zaman, et al.
Published: (2020-12-01)

Assessing and visualizing fragility of clinical results with binary outcomes in R using the fragility package.
by: Lifeng Lin, et al.
Published: (2022-01-01)

MPicker: visualizing and picking membrane proteins for cryo-electron tomography
by: Xiaofeng Yan, et al.
Published: (2025-01-01)

Multi-bandwidth reconstruction for photoacoustic tomography using cascade U-net
by: Zezheng Qin, et al.
Published: (2025-01-01)

Computed tomography reconstruction and morphometric analysis of the humerus and femur in new zealand rabbits
by: Muhammet Lutfi Selcuk
Published: (2023-12-01)

Positron emission tomography molecular imaging for pathological visualization in multiple system atrophy
by: La Dong, et al.
Published: (2025-03-01)

Optical coherence tomography characteristics in hydroxychloroquine retinopathy and the correlations with visual deterioration in Taiwanese
by: Shao-Kai He, et al.
Published: (2024-12-01)

Dual Domain Swin Transformer based Reconstruction method for Sparse-View Computed Tomography
by: Jonas Van der Rauwelaert, et al.
Published: (2025-02-01)

Evaluation of Algebraic Iterative Image Reconstruction Methods for Tetrahedron Beam Computed Tomography Systems
by: Joshua Kim, et al.
Published: (2013-01-01)

Image Reconstruction for High-Performance Electrical Capacitance Tomography System Using Deep Learning
by: Yanpeng Zhang, et al.
Published: (2021-01-01)

A Finite Element Mesh Aggregating Approach to Multiple-Source Reconstruction in Bioluminescence Tomography
by: Jingjing Yu, et al.
Published: (2011-01-01)

A Reconstruction Approach for Imaging in 3D Cone Beam Vector Field Tomography
by: T. Schuster, et al.
Published: (2008-01-01)

Corrigendum to “Polychromatic Iterative Statistical Material Image Reconstruction for Photon-Counting Computed Tomography”
by: Thomas Weidinger, et al.
Published: (2018-01-01)

Reconstruction of Optical Coherence Tomography Images from Wavelength Space Using Deep Learning
by: Maryam Viqar, et al.
Published: (2024-12-01)

Si Substrate Backside—An Emerging Physical Attack Surface for Secure ICs in Flip Chip Packaging
by: Makoto Nagata, et al.
Published: (2024-01-01)

Predicting Visual Outcomes for Macula-Off Rhegmatogenous Retinal Detachment with Optical Coherence Tomography
by: Noriyuki Suzuki, et al.
Published: (2014-01-01)

Study on Void Structure Reconstruction of Asphalt Mixture by X-Ray Computed Tomography and Otsu’s Method
by: Jiantong Zhang, et al.
Published: (2020-01-01)

A Penalized Linear and Nonlinear Combined Conjugate Gradient Method for the Reconstruction of Fluorescence Molecular Tomography
by: Shang Shang, et al.
Published: (2007-01-01)

3D Reconstruction of a Nuclear Reactor by Muon Tomography: Structure Validation and Anomaly Detection
by: Baptiste Lefevre, et al.
Published: (2025-01-01)

3D Instantaneous Reconstruction of Turbulent Industrial Flames Using Computed Tomography of Chemiluminescence (CTC)
by: A. Unterberger, et al.
Published: (2018-01-01)

Three-dimensional reconstruction from computed tomography images of respiratory system in new zealand rabbits
by: Mustafa Orhun Dayan, et al.

Unsupervised Visual-to-Geometric Feature Reconstruction for Vision-Based Industrial Anomaly Detection
by: Dinh-Cuong Hoang, et al.
Published: (2025-01-01)

Image Reconstruction Algorithm Based on Tree Sparsity Model for Visual Sensor Network
by: Min Hu, et al.
Published: (2013-02-01)

Protocol for the isolation of brain microvessels and visualization of RNA fluorescence in mice and humans
by: Olivia M. Osborne, et al.
Published: (2025-03-01)

Packaging the Naked Buddhas
by: Dina Bangdel
Published: (2016-10-01)

Notes from the Packaging Laboratory: Polylactic Acid -- An Exciting New Packaging Material
by: Melisa Balkcom, et al.
Published: (2003-12-01)

Discussion on the Design and Performance of the Whole Packaging Box of Environmentally Friendly Packaging Materials
by: Mengwei Xie
Published: (2021-01-01)

Notes from the Packaging Laboratory: Polylactic Acid -- An Exciting New Packaging Material
by: Melisa Balkcom, et al.
Published: (2003-12-01)

The Relationship between Visual-Evoked Potential and Optic Coherence Tomography and Clinical Findings in Parkinson Patients
by: Zeynep Tuncer, et al.
Published: (2023-01-01)

Role of the Psi Packaging Signal and Dimerization Initiation Sequence in the Organization of Rous Sarcoma Virus Gag-gRNA Co-Condensates
by: Gregory S. Lambert, et al.
Published: (2025-01-01)

Sparse Regularization-Based Reconstruction for Bioluminescence Tomography Using a Multilevel Adaptive Finite Element Method
by: Xiaowei He, et al.
Published: (2011-01-01)

A Reproducible Method for Donor Site Computed Tomography Measurements in Abdominally Based Autologous Breast Reconstruction
by: Damini Tandon, MD, et al.
Published: (2025-01-01)

Visualization Method of Heat Risk through Light Environment Reproduction Considering Cloud Coverage
by: Shibata Ryoya, et al.
Published: (2025-01-01)

Reducing lead requirements for wearable ECG: Chest lead reconstruction with 1D-CNN and Bi-LSTM
by: Kazuki Hebiguchi, et al.
Published: (2025-01-01)