Scalable method for exploring phylogenetic placement uncertainty with custom visualizations using treeio and ggtree

Scalable method for exploring phylogenetic placement uncertainty with custom visualizations using treeio and ggtree

Abstract In metabarcoding research, such as taxon identification, phylogenetic placement plays a critical role. However, many existing phylogenetic placement methods lack comprehensive features for downstream analysis and visualization. Visualization tools often ignore placement uncertainty, making...

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Bibliographic Details
Main Authors: Meijun Chen, Xiao Luo, Shuangbin Xu, Lin Li, Junrui Li, Zijing Xie, Qianwen Wang, Yufan Liao, Bingdong Liu, Wenquan Liang, Ke Mo, Qiong Song, Xia Chen, Tommy Tsan‐Yuk Lam, Guangchuang Yu
Format: Article
Language:English
Published: Wiley 2025-02-01
Series:iMeta
Subjects:
ggtree
phylogenetic placement
placement uncertainty
treeio
visualization
Online Access:https://doi.org/10.1002/imt2.269
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https://doi.org/10.1002/imt2.269

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