The Complete Chloroplast Genome of Erythrina variegata L. (Papilionoideae, Fabaceae)
ABSTRACT Erythrina variegata L. 1754, a thorny deciduous tree of Fabaceae, contains various chemical compounds such as alkaloids, flavonoids, and triterpenoids and exhibits anti‐depressant, anti‐inflammatory, and antidiabetic activities. However, genomic data of E. variegata are limited. In this stu...
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| Format: | Article |
| Language: | English |
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Wiley
2025-01-01
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| Series: | Ecology and Evolution |
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| Online Access: | https://doi.org/10.1002/ece3.70838 |
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| author | Nguyen Nhat Nam Nguyen Ngoc Trai Nguyen Phuong Thuy Le Quoc Duy Pham Nguyen Tuong Van Tan Tai Nguyen Hoang Dang Khoa Do |
| author_facet | Nguyen Nhat Nam Nguyen Ngoc Trai Nguyen Phuong Thuy Le Quoc Duy Pham Nguyen Tuong Van Tan Tai Nguyen Hoang Dang Khoa Do |
| author_sort | Nguyen Nhat Nam |
| collection | DOAJ |
| description | ABSTRACT Erythrina variegata L. 1754, a thorny deciduous tree of Fabaceae, contains various chemical compounds such as alkaloids, flavonoids, and triterpenoids and exhibits anti‐depressant, anti‐inflammatory, and antidiabetic activities. However, genomic data of E. variegata are limited. In this study, the complete chloroplast genome of E. variegata was sequenced and characterized using Illumina sequencing platform. The chloroplast genome of E. variegata was 152,351 bp in length and consisted of a large single copy (82,907 bp), a small single copy (26,309 bp), and two inverted repeat regions (16,826 bp). There were 79 protein‐coding genes, 30 transfer RNA genes, and four ribosomal RNA genes. Comparative analysis revealed high conservation of chloroplast genomes among Erythrina species regarding genome size, structure, and gene content. The phylogenetic study also indicated a close relationship between E. variagata and E. sanwicensis. This study provides initial plastome data for further genomic studies examining E. variegata and related species in Fabaceae. |
| format | Article |
| id | doaj-art-37bb84a3c8374e33920dc3617bc807aa |
| institution | Kabale University |
| issn | 2045-7758 |
| language | English |
| publishDate | 2025-01-01 |
| publisher | Wiley |
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| series | Ecology and Evolution |
| spelling | doaj-art-37bb84a3c8374e33920dc3617bc807aa2025-01-29T05:08:41ZengWileyEcology and Evolution2045-77582025-01-01151n/an/a10.1002/ece3.70838The Complete Chloroplast Genome of Erythrina variegata L. (Papilionoideae, Fabaceae)Nguyen Nhat Nam0Nguyen Ngoc Trai1Nguyen Phuong Thuy2Le Quoc Duy3Pham Nguyen Tuong Van4Tan Tai Nguyen5Hoang Dang Khoa Do6School of Agriculture and Aquaculture Tra Vinh University Tra Vinh City VietnamSchool of Agriculture and Aquaculture Tra Vinh University Tra Vinh City VietnamSchool of Agriculture and Aquaculture Tra Vinh University Tra Vinh City VietnamSchool of Agriculture and Aquaculture Tra Vinh University Tra Vinh City VietnamCollege of Medicine and Pharmacy Tra Vinh University Tra Vinh City VietnamBiotechnology Institute Tra Vinh University Tra Vinh City VietnamFunctional Genomics Research Center, NTT Hi‐Tech Institute Nguyen Tat Thanh University Ho Chi Minh City VietnamABSTRACT Erythrina variegata L. 1754, a thorny deciduous tree of Fabaceae, contains various chemical compounds such as alkaloids, flavonoids, and triterpenoids and exhibits anti‐depressant, anti‐inflammatory, and antidiabetic activities. However, genomic data of E. variegata are limited. In this study, the complete chloroplast genome of E. variegata was sequenced and characterized using Illumina sequencing platform. The chloroplast genome of E. variegata was 152,351 bp in length and consisted of a large single copy (82,907 bp), a small single copy (26,309 bp), and two inverted repeat regions (16,826 bp). There were 79 protein‐coding genes, 30 transfer RNA genes, and four ribosomal RNA genes. Comparative analysis revealed high conservation of chloroplast genomes among Erythrina species regarding genome size, structure, and gene content. The phylogenetic study also indicated a close relationship between E. variagata and E. sanwicensis. This study provides initial plastome data for further genomic studies examining E. variegata and related species in Fabaceae.https://doi.org/10.1002/ece3.70838comparative genomicsIndian coral treephylogenyplastome |
| spellingShingle | Nguyen Nhat Nam Nguyen Ngoc Trai Nguyen Phuong Thuy Le Quoc Duy Pham Nguyen Tuong Van Tan Tai Nguyen Hoang Dang Khoa Do The Complete Chloroplast Genome of Erythrina variegata L. (Papilionoideae, Fabaceae) Ecology and Evolution comparative genomics Indian coral tree phylogeny plastome |
| title | The Complete Chloroplast Genome of Erythrina variegata L. (Papilionoideae, Fabaceae) |
| title_full | The Complete Chloroplast Genome of Erythrina variegata L. (Papilionoideae, Fabaceae) |
| title_fullStr | The Complete Chloroplast Genome of Erythrina variegata L. (Papilionoideae, Fabaceae) |
| title_full_unstemmed | The Complete Chloroplast Genome of Erythrina variegata L. (Papilionoideae, Fabaceae) |
| title_short | The Complete Chloroplast Genome of Erythrina variegata L. (Papilionoideae, Fabaceae) |
| title_sort | complete chloroplast genome of erythrina variegata l papilionoideae fabaceae |
| topic | comparative genomics Indian coral tree phylogeny plastome |
| url | https://doi.org/10.1002/ece3.70838 |
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