REPrise: de novo interspersed repeat detection using inexact seeding

Abstract Background Interspersed repeats occupy a large part of many eukaryotic genomes, and thus their accurate annotation is essential for various genome analyses. Database-free de novo repeat detection approaches are powerful for annotating genomes that lack well-curated repeat databases. However...

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Bibliographic Details
Main Authors: Atsushi Takeda, Daisuke Nonaka, Yuta Imazu, Tsukasa Fukunaga, Michiaki Hamada
Format: Article
Language:English
Published: BMC 2025-04-01
Series:Mobile DNA
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Online Access:https://doi.org/10.1186/s13100-025-00353-0
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