The open-closed mod-minimizer algorithm

Abstract Sampling algorithms that deterministically select a subset of $$k$$ k -mers are an important building block in bioinformatics applications. For example, they are used to index large textual collections, like DNA, and to compare sequences quickly. In such applications, a sampling algorithm i...

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Bibliographic Details
Main Authors: Ragnar Groot Koerkamp, Daniel Liu, Giulio Ermanno Pibiri
Format: Article
Language:English
Published: BMC 2025-03-01
Series:Algorithms for Molecular Biology
Subjects:
Online Access:https://doi.org/10.1186/s13015-025-00270-0
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