DelaySSA: stochastic simulation of biochemical systems and gene regulatory networks with or without time delays.

Stochastic Simulation Algorithm (SSA) is crucial for modeling biochemical reactions and gene regulatory networks. Traditional SSA is characterized by Markovian property and cannot naturally model systems with time delays. Several algorithms have already been designed to handle delayed reactions, yet...

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Bibliographic Details
Main Authors: Ziyan Jin, Xinyi Zhou, Zhaoyuan Fang
Format: Article
Language:English
Published: Public Library of Science (PLoS) 2025-04-01
Series:PLoS Computational Biology
Online Access:https://doi.org/10.1371/journal.pcbi.1012919
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