Pangenome graph mitigates heterozygosity overestimation from mapping bias: a case study in Chinese indigenous pigs

Abstract Background Breeds genetically distant from the reference genome often show considerable differences in DNA fragments, making it difficult to achieve accurate mappings. The genetic differences between pig reference genome (Sscrofa11.1) and Chinese indigenous pigs may lead to mapping bias and...

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Bibliographic Details
Main Authors: Jian Miao, Qingyu Wang, Zhe Zhang, Qishan Wang, Yuchun Pan, Zhen Wang
Format: Article
Language:English
Published: BMC 2025-03-01
Series:BMC Biology
Subjects:
Online Access:https://doi.org/10.1186/s12915-025-02194-y
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