Transcriptome responses to Ralstonia solanacearum infection in tetraploid potato by Zhuo Chen, Shunwei Shao, Xi Zhu, Yu Zhang, Zhendong Lan, Hui Jin

“…Gene ontology and KEGG analyses provided further insights into the genetic basis and molecular mechanisms underlying plant defense against R. solanacearum disease. …”
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Comprehensive resolution and classification of the Epstein Barr virus transcriptome by Truong D. Nguyen, Jia Wang, Meggie T. Lam, Harris McFerrin, Tina M. O’Grady, Claire Roberts, Nicholas Van Otterloo, Trang T. Nguyen, Melody Baddoo, Dorota Wyczechowska, Maria Morales, Yan Dong, Erik K. Flemington

“…Through long-read sequencing, we provide a comprehensive Epstein Barr virus (EBV) transcriptome analysis, identifying 1453 transcript isoforms and resolving the major isoform of all but one lytic reading frame. …”
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Comprehensive analysis of Metacrinus rotundus full length transcriptome by Zhong Li, Yue Dong, Xuebao He, Chen Han, Xiaomei Liao, Jing Mo, Qian Zhang, Xuelei Zhang, Zongling Wang, Qinzeng Xu

“…Our study enhances understanding of the characteristics of M. rotundus transcriptome and provides a valuable genetic resource for further studies on adaptive evolution in this species, as well as in other crinoids.…”
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Massively parallel sequencing and analysis of the Necator americanus transcriptome. by Cinzia Cantacessi, Makedonka Mitreva, Aaron R Jex, Neil D Young, Bronwyn E Campbell, Ross S Hall, Maria A Doyle, Stuart A Ralph, Elida M Rabelo, Shoba Ranganathan, Paul W Sternberg, Alex Loukas, Robin B Gasser

“…<h4>Conclusions</h4>This study has provided detailed insights into the transcriptome of the adult stage of N. americanus and examines similarities and differences between this species and A. caninum. …”
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Transcriptomic Analysis of Fludioxonil Resistance Mechanisms in Botrytis cinerea by Maria Camila Buitrago Acosta, Nicole T. Lukasko, Mary K. Hausbeck, Timothy D. Miles, Rachel P. Naegele

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Transcriptomic insights into Candida albicans adaptation to an anaerobic environment by Karen D. Zeise, John R. Erb-Downward, Gary B. Huffnagle

“…In this study, we used RNA sequencing to compare the global transcriptomic profiles of two strains of C. albicans (SC5314 and CHN1) grown purely anaerobically to those grown aerobically. …”
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Dissection of transcriptome and metabolome insights into the polyphyllin biosynthesis in Paris by Ping Xu, Qi Mi, Xiaoye Zhang, Xuan Zhang, Mengwen Yu, Yingsi Gao, Xiheng Wan, Yichun Chen, Qiaoyuan Li, Jia Chen, Guowei Zheng

“…Results In this study, we investigate the global metabolic and transcriptomic profiles of three types of Paris polyphylla var. yunnanensis (Franch.) …”
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Full-Length Transcriptome Sequencing and Comparative Transcriptomics Reveal the Molecular Mechanisms Underlying Gonadal Development in Sleepy Cod (<i>Oxyeleotris lineolata</i>) by Jiajia Fan, Dongmei Ma, Huaping Zhu, Minghui Lin, Zaixuan Zhong, Yuanyuan Tian

“…The expression levels of all 20 screened genes were consistent with the transcriptome sequencing results. The present study provides new genetic resources—including full-length transcriptome sequences and annotation information—as a coding genomic-level reference for sleepy cod—yielding valuable insights into the genetic mechanisms of sex determination and gonadal differentiation in this economically important species.…”
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Transcriptomic Divergence and Associated Markers Between Genomic Lineages of Silver Catfish (Rhamdia quelen) by Néstor Ríos, Belén G. Pardo, Carlos Fernández, José Antonio Alvarez‐Dios, Paulino Martínez, Carmen Bouza, Graciela García

“…In this study, we characterized the R. quelen transcriptome in brain, head kidney, liver, skeletal muscle, testis, and ovary by RNAseq to target genes and associated markers involved in key adaptive traits. …”
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Understanding the metabolism of Mycoplasma mycoides subsp. capri in vitro by a transcriptomic analysis by Xiao-hui WANG, Yan-fang WANG, Hai-bi HUANG, Fan BAI, Xiao-na SHI, Chang-jiao MA, Yuan GAO, Jian-hua ZHANG, Wen-guang ZHANG, Yong-qing HAO

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Integrated metabolomic and transcriptomic analysis of anthocyanin metabolism in wheat pericarp by Jiao Wang, Lei Sun, Bo Jiao, Pu Zhao, Tianyun Xu, Sa Gu, Chenmin Huo, Jianzhou Pang, Shuo Zhou

“…In this study, a transcriptomic and metabolomic analysis between white and purple color wheat pericarp aimed to explore some key genes and metabolites involved in anthocyanin metabolism. …”
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An Integrated Analysis of Transcriptomic and Metabolomic Effects Reveals Insights into Stress Responses in Largemouth Bass (<i>Micropterus salmoides</i>) Under MS-222 (Tricaine Met... by Ping Gao, Rimeng Chen, Deyun Ma, Shanshan Lin, Haodong Yu, Xuezhen Zhang

“…Therefore, this study investigated the tissue-specific transcriptomic and metabolomic effects of MS-222 anesthesia on largemouth bass (<i>Micropterus salmoides</i>). …”
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Advances in Microfluidic Single-Cell RNA Sequencing and Spatial Transcriptomics by Yueqiu Sun, Nianzuo Yu, Junhu Zhang, Bai Yang

“…As omics technologies improve, microfluidic chips can now integrate promising transcriptomics technologies, providing new insights from molecular characterization for tissue gene expression profiles and further revealing the static and even dynamic processes of tissues in homeostasis and disease. …”
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Revealing new mouse epicardial cell markers through transcriptomics. by Lars Bochmann, Padmini Sarathchandra, Federica Mori, Enrique Lara-Pezzi, Domenico Lazzaro, Nadia Rosenthal

“…<h4>Conclusion</h4>This study presents the description of the murine epicardial transcriptome obtained from snap frozen tissues, providing essential information for further analysis of this important cardiac cell layer.…”
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The transcriptomic basis of oviposition behaviour in the parasitoid wasp Nasonia vitripennis. by Bart A Pannebakker, Urmi Trivedi, Mark L Blaxter, Rebekah Watt, David M Shuker

“…Oviposition in Nasonia therefore clearly modifies the transcriptome, providing a starting point for the genetic dissection of oviposition.…”
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Joint cell segmentation and cell type annotation for spatial transcriptomics by Russell Littman, Zachary Hemminger, Robert Foreman, Douglas Arneson, Guanglin Zhang, Fernando Gómez‐Pinilla, Xia Yang, Roy Wollman

“…Abstract RNA hybridization‐based spatial transcriptomics provides unparalleled detection sensitivity. …”
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Heterogeneity and longitudinal transcriptomic characteristics of Tregs in COVID-19 patients by Yanling Wen, Juanjuan Zhao, Zheng Zhang

“…Understanding these issues is essential for better managing immune responses in COVID-19 patients.MethodsWe collected a cohort of COVID-19 patients with varying disease severity and stage to explore the transcriptomic and functional traits of Tregs in these individuals. …”
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Exploring the genomic and transcriptomic profiles of glycemic traits and drug repurposing by Min-Rou Lin, Cheng-Lin Tsai, Cai-Sian Liao, Chun-Yu Wei, Wan-Hsuan Chou, Tzu-Hung Hsiao, Wei-Chiao Chang

“…The study integrated genetics, transcriptomics, biological pathway analyses, polygenic risk score calculation, and drug repurposing for type 2 diabetes. …”
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Illumina-based transcriptome sequencing of mussel Mytilus coruscus mantle by Bao Linfei, Wang Xinxing, He Jianyu, Fan Meihua, Gao Peng, Liao Zhi

“…The transcriptomic resource can also provide a foundation for further investigations on the formation and bio-mineralization of mussel shell.…”
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Evaluation of the authenticity of Citri Grandis Exocarpium based on metabolomics and transcriptomics by Haiting Huang, Yu Liu, Jianmu Su, Xiangxiu Liang, Hong Wu, Mei Bai

“…The integrative metabolomics and transcriptomics analysis identified 11 key structural genes and transcription factors potentially involved in flavonoid biosynthesis, providing candidate targets for functional validation. …”
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