Full-length transcriptomes of 25 grassland plant species by Chongyi Jiang, Zixia Huang, Cynthia Meizoso, Gaby Kumpfmüller, Jochen B. W. Wolf, Holger Schielzeth

“…Abstract Grasslands are essential, biodiverse ecosystems providing critical ecosystem services. Despite their ecological and economic value, transcriptomic resources for wild grassland species to support eco-evolutionary and functional genomic studies remain limited. …”
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Transcriptome-wide assessment of human brain and lymphocyte senescence. by Mun-Gwan Hong, Amanda J Myers, Patrik K E Magnusson, Jonathan A Prince

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Cancer staging diagnosis based on transcriptomics and variational autoencoder by LI Jiarui, QIAN Li, SHEN Junjie

“…Objective‍　‍To conduct an in-depth analysis and feature extraction of the transcriptomics data of 10 types of cancers in order to realize the staging diagnosis of cancer samples. …”
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Intracellular spatial transcriptomic analysis toolkit (InSTAnT) by Anurendra Kumar, Alex W. Schrader, Bhavay Aggarwal, Ali Ebrahimpour Boroojeny, Marisa Asadian, JuYeon Lee, You Jin Song, Sihai Dave Zhao, Hee-Sun Han, Saurabh Sinha

“…We present Intracellular Spatial Transcriptomic Analysis Toolkit (InSTAnT), a computational toolkit for extracting molecular relationships from spatial transcriptomics data at single molecule resolution. …”
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Transcriptome analysis of calcium hydroxide tolerance in Enterococcus faecalis by Zhibo Xu, Zhibo Xu, Haonan Ma, Xinmiao Jiang, Quzhen Baima, Yuqi Zhen, Shipeng Yang, Xiuping Meng

“…RNA sequencing further revealed that this tolerance involves multiple interconnected signaling pathways, providing a critical foundation for future research into therapeutic strategies for E. faecalis infections.…”
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Metabonomic, transcriptomic, and genomic variation of a population cohort by Michael Inouye, Johannes Kettunen, Pasi Soininen, Kaisa Silander, Samuli Ripatti, Linda S Kumpula, Eija Hämäläinen, Pekka Jousilahti, Antti J Kangas, Satu Männistö, Markku J Savolainen, Antti Jula, Jaana Leiviskä, Aarno Palotie, Veikko Salomaa, Markus Perola, Mika Ala‐Korpela, Leena Peltonen

“…We assessed metabonomic, transcriptomic, and genomic variation for a large population‐based cohort from the capital region of Finland. …”
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Transcriptome Landscape of Cancer‐Associated Fibroblasts in Human PDAC by Mengyu Tao, Wenting Liu, Jianhua Chen, Rujiao Liu, Jianling Zou, Bo Yu, Chenchen Wang, Mingzhu Huang, Qingjian Chen, Zhe Zhang, Zhiyu Chen, Haoyu Sun, Cheng Zhou, Shuguang Tan, Yuxuan Zheng, Hongxia Wang

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Sex Differences in Brain Transcriptomes of Juvenile Cynomolgus Macaques by Nadia Kabbej, Frederick J. Ashby, Alberto Riva, Paul D. Gamlin, Ronald J. Mandel, Aishwarya Kunta, Courtney J. Rouse, Coy D. Heldermon

“…Our results provide pre-pubertal information on sexual differences in non-human primate brain transcriptomics and may provide insight into health disparities between the biological sexes in humans.…”
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Nuclear RNA sequencing of the mouse erythroid cell transcriptome. by Jennifer A Mitchell, Ieuan Clay, David Umlauf, Chih-Yu Chen, Catherine A Moir, Christopher H Eskiw, Stefan Schoenfelder, Lyubomira Chakalova, Takashi Nagano, Peter Fraser

“…In conclusion, sequencing the nuclear transcriptome provides an opportunity to investigate the transcriptional landscape in a given cell type through quantification of unspliced primary transcripts and the identification of nuclear-retained long non-coding RNAs.…”
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Comprehensive transcriptome of muscle development in Sichuan white rabbit by Xiangyu Zhang, Kai Zhang, Dengping Huang, Shangjun Yang, Min Zhang, Qin Yin

“…Conclusions Our study provides a comprehensive overview of the transcriptomic changes during muscle development in Sichuan white rabbits. …”
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Different Species of Bats: Genomics, Transcriptome, and Immune Repertoire by Huifang Wang, Hao Zhou, Xinsheng Yao

“…This review provides foundational information, collaboration directions, and new perspectives for various laboratories conducting basic and applied research on the vast array of bat biology.…”
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Validation of Immune Cell Modules in Multicellular Transcriptomic Data. by Gabriele Pollara, Matthew J Murray, James M Heather, Rachel Byng-Maddick, Naomi Guppy, Matthew Ellis, Carolin T Turner, Benjamin M Chain, Mahdad Noursadeghi

“…Numerous gene signatures, or modules have been described to evaluate the immune cell composition in transcriptomes of multicellular tissue samples. However, significant diversity in module gene content for specific cell types is associated with heterogeneity in their performance. …”
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Mapping transcriptomic profiles of seminal vesiculitis and experimental verification by Chenkui Miao, Shaobo Zhang, Jiajin Wu, Meiling Bao, Zengjun Wang, Bianjiang Liu

“…Methods: In this study, we utilized a next-generation sequencing technology to demonstrate transcriptomic landscapes of clinical specimens from seminal vesiculitis patients. …”
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Transcriptome and translatome comparison of tissues from Arabidopsis thaliana by Isabel Cristina Vélez-Bermúdez, Wen-Dar Lin, Shu-Jen Chou, Ai-Ping Chen, Wolfgang Schmidt

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Circadian regulation of the transcriptome in a complex polyploid crop. by Hannah Rees, Rachel Rusholme-Pilcher, Paul Bailey, Joshua Colmer, Benjamen White, Connor Reynolds, Sabrina Jaye Ward, Benedict Coombes, Calum A Graham, Luíza Lane de Barros Dantas, Antony N Dodd, Anthony Hall

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Spatiotemporal transcriptome and metabolome landscapes of cotton somatic embryos by Xiaoyang Ge, Xiaole Yu, Zhixin Liu, Jiachen Yuan, Aizhi Qin, Ye Wang, Yanli Chen, Wenqiang Qin, Yumeng Liu, Xingxing Liu, Yaping Zhou, Peng Wang, Jincheng Yang, Hao Liu, Zihao Zhao, Mengke Hu, Yixin Zhang, Susu Sun, Luis Herrera-Estrella, Lam-Son Phan Tran, Xuwu Sun, Fuguang Li

“…A publicly available web-based resource database ( https://cotton.cricaas.com.cn/somaticembryo/ ) in this study provides convenience for future studies of the expression patterns of marker genes at specific developmental stages during the process of SE in cotton.…”
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Transcriptomic analysis reveals polygalacturonase genes in Pachypeltis micranthus by ZHU Jiaying, JI Mei, YANG Bin, ZE Sangzi

“…Based on the P. micranthus transcriptome, 24 putative PG genes were identified, of which 15 were predicted to be full-length protein sequences. …”
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Transcriptomic characterization of temperature stress responses in larval zebrafish. by Yong Long, Linchun Li, Qing Li, Xiaozhen He, Zongbin Cui

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Advances in spatial transcriptomics and its application in the musculoskeletal system by Haoyu Wang, Peng Cheng, Juan Wang, Hongzhi Lv, Jie Han, Zhiyong Hou, Ren Xu, Wei Chen

“…This review provides a summary of recent advances in spatial transcriptomics and its application to the musculoskeletal system. …”
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Physiological and transcriptomic responses of pumpkin to lead and ozone stress by Wenjing Liu, Jiawei Luo, Donggang Guo, Quanxi Zhang

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