Integrated Transcriptomic and Metabolomic Provide Insights into Strawberry Bioactive Compounds and Antioxidant Activities Under Varying Ecological Conditions by Mingzheng Duan, Huaizheng Wang, Kangjian Song, Honggao Liu, Shu Jiang, Jieming Feng, Shiping Jiang, Muhammad Junaid Rao, Abdul Rauf, Muhammad Ikram, Muhammad Faizan Khurram, Maryam Tahira, Shunqiang Yang, Xiande Duan

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Integrative Analysis of Transcriptomics and Metabolomics Provides Insights into Meat Quality Differences in Hu Sheep with Different Carcass Performance by Xiaoxue Zhang, Liming Zhao, Huibin Tian, Zongwu Ma, Qi Zhang, Mengru Pu, Peiliang Cao, Deyin Zhang, Yukun Zhang, Yuan Zhao, Jiangbo Cheng, Quanzhong Xu, Dan Xu, Xiaobin Yang, Xiaolong Li, Weiwei Wu, Fadi Li, Weimin Wang

“…In our study, we conducted an integrative analysis of transcriptomics and metabolomics to investigate the molecular mechanisms underlying meat quality differences in Hu sheep with high (HHS, <i>n</i> = 10) and low (LHS, <i>n</i> = 10) carcass performance. …”
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Integrated metabolome and transcriptome analysis provides clues to fruit color formation of yellow, orange, and red bell pepper by Qiqin Xue, Qingxia Zhang, Aiai Zhang, Da Li, Yongguang Liu, Haicheng Xu, Qinghua Yang, Fengyan Liu, Tongyao Han, Xiaozhen Tang, Xiurong Zhang

“…Overall, the results not only provide important insights into carotenoid synthesis pathway, but also lay a solid base for revealing the mechanism of bell pepper color transformation.…”
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Integrated transcriptome and metabolome analyses provide molecular insights into the transition of flower color in the rose cultivar ‘Juicy Terrazza’ by Yun Xuan, Jie Ren, Zhu Chen, Dan Shi

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Comparative transcriptome analysis of different tissues of Hylomecon japonica provides new insights into the biosynthesis pathway of triterpenoid saponins by Bing He, Teng Xu, Shaowei Xu, Huqiang Fang, Qingshan Yang, Qingshan Yang

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Transcriptomics and proteomics provide insights into the adaptative strategies of Tibetan naked carps (Gymnocypris przewalskii) to saline-alkaline variations by Bingzheng Zhou, Ruichen Sui, Luxian Yu, Delin Qi, Shengyun Fu, Ying Luo, Hongfang Qi, Xiaohuan Li, Kai Zhao, Sijia Liu, Fei Tian

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Comparative Physiological and Transcriptomics Profiling Provides Integrated Insight into Melatonin Mediated Salt and Copper Stress Tolerance in <i>Selenicereus undatus</i> L. by Darya Khan, Xin Yang, Gong He, Raja Asad Ali Khan, Babar Usman, Liu Hui, Aamir Ali Khokhar, Qamar U Zaman, Hua-Feng Wang

“…Antioxidant activities were also modulated by stress. Transcriptomic analysis revealed 21 differentially expressed genes (DEGs) common across stress treatments and 13 DEGs specific to combined melatonin with stress treatments involved in stress signaling, secondary metabolite biosynthesis, and photosynthesis. …”
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Integrated transcriptome and metabolome provide insights into flavonoid biosynthesis in 'P113', a new purple tea of Camellia tachangensis by Fang Li, Xinyue Deng, Zheng Huang, Zhifei Zhao, Caiyun Li, Qinfei Song, Yingqin He, Suzhen Niu

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Combined transcriptome and metabolome analysis provides insight into the ERF073 – Malic acid network in pakchoi under submergence stress by Dan-dan Xi, Lu Gao, Li-ao Ge, Hong-fang Zhu, Li-ming Miao, Ding-yu Zhang, Chang-wei Zhang, Ying Li, Yan-xiao Dong, Xi-lin Hou, Yu-ying Zhu, Zhao-hui Zhang, Xiao-feng Li

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Transcriptomic Analysis of Resistant and Susceptible Bombyx mori Strains Following BmNPV Infection Provides Insights into the Antiviral Mechanisms by Gang Li, Heying Qian, Xufang Luo, Pingzhen Xu, Jianhua Yang, Mingzhu Liu, Anying Xu

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Integrated Analysis of Transcriptomics and Proteomics Provides Insights into the Accumulation Mechanism of Ascorbic Acid in <i>Rosa roxburghii</i> Tratt by Pei Li, Bo Mu, Jing Liu, Wenqing Wu, Can He, Boxi Tan, Shijing Tang, Lu Yu

“…Furthermore, we conducted an integrated analysis of transcriptomic and proteomic data for the first time to investigate the mechanisms responsible for AsA accumulation in RRT. …”
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Integrative physiological and transcriptomic analysis provides insights on the molecular basis of ABA-enhanced drought tolerance in pear (Pyrus betulaefolia) by Guo-Ling Guo, An-Ran Luo, Yun-Hui Tan, Rui-Kang Yuan, Ting-Yue Luo, Pan-Pan Ma, Jun-Yu Zhan, Piao Han, Li Liu, Wei Heng, Zhenfeng Ye, Sheng Yang, Bing Jia

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Comparative transcriptomics and metabolomics provide insight into degeneration‐related physiological mechanisms of Morchella importuna after long‐term preservation by Ying Chen, Xuelian Cao, Liyuan Xie, Jie Tang, Lixu Liu, Di Wang, Xiang Wu, Tianhai Liu, Yang Yu, Yong Wang, Francis Martin, Weihong Peng, Hao Tan

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Comparative transcriptome analysis provides a glance into the regulation of the Krüppel homolog 1 on the reproduction and diapause of the predatory ladybeetle, Coccinella septempunctata by Junjie Chen, Xiaoxiao Liu, Shunda Han, Maosen Zhang, Zhaohan Liu, Yuyan Li, Lisheng Zhang

“…In this study, we utilized RNA-Sequencing to investigate the transcriptomic changes in C. septempunctata following RNA interference targeting the Kr-h1 gene. …”
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Integrated Transcriptomics and Metabolomics Provide Insight into Degeneration-Related Molecular Mechanisms of <i>Morchella importuna</i> During Repeated Subculturing by Wenyan Huo, Xuelian He, Yu Liu, Liguang Zhang, Lu Dai, Peng Qi, Ting Qiao, Suying Hu, Pengpeng Lu, Junzhi Li

“…This study investigated <i>Morchella importuna</i> strain degeneration during repeated subculturing and employed metabolomics, transcriptomics, and other techniques to explore its molecular mechanisms. …”
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Integrative transcriptomics and proteomics analysis provide a deep insight into goose astrovirus-host interactions during GAstV infection by Jianzhou Shi, Qianyue Jin, Jinbing Zhao, Jinran Yu, Xianyi Yu, Guirong Sun, Lunguang Yao

“…Through GO and KEGG enrichment analysis, DEG and DEP were significantly enriched in several important cellular signaling pathways, including MAPK, PI3K-Akt, cAMP, chemokine, calcium, phospholipase D, Ras, TNF, IL-17, Rap1, NF-kappa B signaling pathways, indicating that GAstV affects cell growth and immune signaling. This study provided an overview of changes in transcriptome and proteome profiles of GAstV-infected LMH cells, therefore, providing a crucial basis to further explore the mechanisms of GAstV-host interactions.…”
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Transcriptomic and metabolomic analyses provide evidence on the biocontrol mechanism responsible for the inhibition of Botrytis cinerea and Alternaria alternata by Bacillus velezensis in kiwifruit by Shixian Zeng, Xiaojiao Li, Jinsong Leng, Michael Wisniewski, Mingrong Chen, Yong Wang, Jia Liu

“…The objectives of the present study were to determine the efficacy of B. velezensis against B. cinerea and A. alternata, both of which are pre‐ and postharvest pathogens of kiwifruit, and investigate the mechanisms responsible for its biocontrol activity using transcriptomic and metabolomic methodology. Dual cultures of B. velezensis and either B. cinerea or A. alternata versus single cultures were used to conduct a transcriptomic and metabolomic analyses to provide insight into the mechanism by which B. velezensis inhibits B. cinerea and A. alternata. …”
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Analysis of the human monocyte-derived macrophage transcriptome and response to lipopolysaccharide provides new insights into genetic aetiology of inflammatory bowel disease. by J Kenneth Baillie, Erik Arner, Carsten Daub, Michiel De Hoon, Masayoshi Itoh, Hideya Kawaji, Timo Lassmann, Piero Carninci, Alistair R R Forrest, Yoshihide Hayashizaki, FANTOM Consortium, Geoffrey J Faulkner, Christine A Wells, Michael Rehli, Paul Pavli, Kim M Summers, David A Hume

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Physiological and transcriptome analyses provide new insights into the mechanism mediating the enhanced tolerance of melatonin-treated rhododendron plants to heat stress by Yan-xia XU, Jing ZHANG, Zi-yun WAN, Shan-xia HUANG, Hao-chen DI, Ying HE, Song-heng JIN

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Integrated metabolome and transcriptome analyses provide comprehensive insight into dark- and light-responsive mechanisms in Althaea officinalis hairy root cultures by Yun Ji Park, Jae Kwang Kim, Nam Su Kim, Young Jin Park, Ramaraj Sathasivam, Sang Un Park

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