Transcriptome analysis provides insights into aril development regulated gene network in lychee, longan, and rambutan by Suyan Wan, Fei Dong, Yaying Ma, Yuan Yao, Yang Wang, Yawen Xu, Ray Ming, Wenping Zhang

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Full-length transcriptome provides insights into the molecular regulation of seed spike number in Agropyron mongolicum by Meiying Guo, Yaqin Wei, Xiqiang Liu, Xintian Huang, Yaling Liu, Yan Zhao

“…Notably, 8 DEGs were specifically expressed in young spikes and mature spikes of the contrasting spike-number germplasms, suggesting their potential role in spike number regulation. This study provides a high-quality transcriptomic resource and identifies candidate genes that may facilitate molecular breeding for enhanced seed yield in A. mongolicum.…”
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Transcriptomic and metabolomic analyses provide insights into the biosynthesis of chlorogenic acids in Lonicera macranthoides Hand.-Mazz. by Yuan Pan, Xiao Zhao, Xiao-Li Wu, Yu Wang, Jun Tan, Da-Xia Chen

“…These researches effectively expanded the functional genomic library and provide new insights into CGAs biosynthesis in L. macranthoides.…”
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Transcriptome and metabolome analyses provide crucial insights into the adaptation of chieh-qua to Fusarium oxysporum infection by Yanchun Qiao, Jiazhu Peng, Bei Wu, Min Wang, Guoping He, Qingwu Peng, Yin Gao, Yuping Liu, Songguang Yang, Xiuchun Dai

“…Through integrated analysis of transcriptome and metabolome, some differential expressed genes significantly related to differential metabolites were also identified.DiscussionThis study provides a basis for understanding and utilizing chieh-qua’s infection mechanism of F. …”
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Molecular profiling of bladder cancer xenografts defines relevant molecular subtypes and provides a resource for biomarker discovery. by Sharada Mokkapati, Ganiraju Manyam, Alexis R. Steinmetz, Côme Tholomier, Alberto Martini, Woonyoung Choi, Bogdon Czerniak, Byron H Lee, Colin P Dinney, David J McConkey

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Transcriptomic Analysis Provides New Insights into Oocyte Growth and Maturation in Greater Amberjack (<i>Seriola dumerili</i>) by Jiahui Yang, Xiaoying Ru, Yang Huang, Jinhui Wu, Tonglin Yang, Peipei Chen, Jin Li, Kunfeng Zhu, Chunhua Zhu

“…In this study, the ovary transcriptome profiles of greater amberjack at three different stages (stage II, III, and IV) were performed, and identified the genes and pathways that may play significant roles in the processes of follicle growth and maturation. …”
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Genomic, transcriptomic and metabolomic analyses of Amorphophallus albus provides insights into the evolution and resistance to southern blight pathogen by Longfei Duan, Longfei Duan, Jianfeng Qin, Gaoxin Zhou, Chuan Shen, Baofu Qin

“…To elucidate the molecular mechanisms underlying southern blight resistance, we performed an integrated analysis of transcriptomic and metabolomic profiles across three infection stages of A. albus.Results and discussionHere, we assembled and annotated the complete genome of A. albus, providing a chromosome-level assembly with a total genome size of 5.94 Gb and a contig N50 of 5.61 Mb. …”
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Combined Physiology and Transcriptome Analyses Provide Insights into Malformed Fruit of <i>Cocos nucifera</i> L. by Lilan Lu, Zhiguo Dong, Yuan Zhang, Siting Chen, Qingxin Wu

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Transcriptomic and metabolomic analysis provides insights into lignin biosynthesis and accumulation and differences in lodging resistance in hybrid wheat by Weibing Yang, Shengquan Zhang, Qiling Hou, Jiangang Gao, Hanxia Wang, Xianchao Chen, Xiangzheng Liao, Fengting Zhang, Changping Zhao, Zhilie Qin

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Integrated metabolomics and transcriptomics analysis provides insights into biosynthesis and accumulation of flavonoids and glucosinolates in different radish varieties by Da Cai, Yanjie Dong, Lei Wang, Shancang Zhao

“…Moreover, systematical biosynthetic pathways of flavonoids and glucosinolates and co-expression networks between genes and metabolites were constructed based on integrative analysis between metabolomics and transcriptomics. Our findings provide a novel insight into the mechanisms of radish quality formation, thereby providing a molecular basis for breeding and cultivation of radish with excellent nutritional quality.…”
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Transcriptome and DNA methylation analyses provide insight into the heterosis of growth-related traits in hybrid yellow croaker by Dan-Dan Guo, Feng Liu, Qing-Ping Xie, Ting Ye, Fu-Liang Wei, Bao-Long Niu, Bao Lou

“…The presented data establish a foundation for comprehending the epigenetic and transcriptomic alterations underlying the growth of hybrid yellow croaker, thereby providing preliminary insights into the molecular mechanisms of growth heterosis. …”
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De Novo Assembly and Comparative Transcriptome Analysis Provide Insight into Lysine Biosynthesis in Toona sinensis Roem by Xia Zhang, Zhenqiao Song, Tian Liu, Linlin Guo, Xingfeng Li

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Combined metabolome and transcriptome analysis provides molecular insights into reproductive process in Chuanxiang Black and Landrace pigs by Jiangling Li, Jinling Zhang, Sujun Zhao, Qiushi Wang, Rui Liu, Xiaohui Chen, Zhiping He

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Single-cell transcriptomic analysis of the human vascular atlas provides new insights into vasorelaxation redundancy and heterogeneity by Elisa Avolio, Sarah F. Pearce, David Wambeke, Paolo Madeddu

“…Recent whole-genomic, single-cell transcriptomic analysis of human vascular cells has revealed angiotypic heterogeneity. …”
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Metabolic profiling and transcriptome analysis of Sinomenium acutum provide insights into the biosynthesis of structurally diverse benzylisoquinoline alkaloids by Xiuyu Liu, Jicong Chen, Rui Ma, Le Zhao, Conglong Lian, Suiqing Chen, Ying Ma

“…In this study, we employed an integrated transcriptomic and metabolomic approach to investigate BIA biosynthesis in S. acutum. …”
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Characterization and transcriptomic analysis provide novel insights into the sexual differentiation of the dioecious plant Bama Huoma (Cannabis sativa) by Xiaofang Liao, Jie Zheng, Wenhuan Hou, Xingfu Tang, Bangbang Huang, Jie Tan, Yanhong Zhao, Kailiang Teng

“…Results In this study, anatomical analysis and dynamic transcriptome profiling were performed to explore the mechanism of sex differentiation in Bama Huoma. …”
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Transcriptome analysis of near-isogenic line provides novel insights into genes associated with panicle traits regulation in rice. by Wuhan Zhang, Pingyong Sun, Qiang He, Fu Shu, Huafeng Deng

“…Use of near-isogenic lines (NILs) reduces genetic background noise in omics studies. We compared transcriptome profiling of 7 cm long young panicles of NIL-Osgrf4 and NIL-OsGRF4 using RNAs sequence analyses. …”
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Comparative Transcriptomics and Intestinal Microbiome Analysis Provide Insights into the Semi-Terrestrial Adaptation of <i>Helice tientsinensis</i> by Zhengfei Wang, Lijie Cui, Xinyu Wang, Chenchen Shen, Yan Wang, Weijie Jiang, Yue Gu

“…Transcriptome analysis showed gene changes related to cytoskeleton–motor, water–osmotic pressure, and energy metabolism. …”
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Transcriptomic Profiling Provides Insight into the Molecular Basis of Heterosis in Philippine-Reared <i>Bombyx mori</i> Hybrids by Ma. Ysabella Elaine D. Conde, Jose Planta, Ma. Anita M. Bautista

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Integrated volatile metabolomic and transcriptomic analysis provides insights into the regulation of odor components between two Ferula species by Zhijia Tian, Jingyi Zhao, Mei Wang, Xiangxue Yu, Qian Li, Bo Chen, Li Zhang, Xinyong Guo

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