Integrated Transcriptomic Analysis Provided Diagnostic and Pathophysiological Insights for Epilepsy by Shuang Li, Zhigang Wang, Yake Zheng, Yunqing Ma, Zhi Huang, Yajun Lian

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The transcriptome of the olm provides insights into its evolution and gene expression by Susanne Holtze, Defne Demirtürk, Oliver Ohlenschläger, Simon Hegele, Kanstantsin Siniuk, Silke Förste, Venket Raghavan, Marco Groth, Martin Bens, Nils Hassel, An Martel, Maja Lukač, Ivan Cizelj, Martin Fischer, Hequn Liu, Thomas B. Hildebrandt, Steve Hoffmann, Arne Sahm

“…To assess the underlying molecular signatures, we present the first comprehensive transcriptome of the olm. Our study provides gene expression data across six organs and comparative genomics analyses, accessible via an interactive web server: http://comp-pheno.de/olm . …”
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Transcriptome analysis provides novel insights into the factors influencing the settlement and metamorphosis of Pinctada maxima by Minxin Liang, Wenhao Yu, Kaiyao He, Qingheng Wang, Yongshan Liao, Ronglian Huang, Dewei Cheng, Yuewen Deng, Zhe Zheng, Chuangye Yang

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Integrated metabolomic and transcriptomic analysis provides insights into the browning of walnut endocarps by Yifeng Wang, Mingxia Wang, Yaonian Chen, Wenbin Hu, Shuling Zhao

“…This study comprehensively analyzed the causes of walnut endocarp browning, providing insights for studying the molecular mechanism of endocarp browning during storage and processing of walnuts and other fruits.…”
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Transcriptomic profiling of watermelon (Citrullus lanatus) provides insights into male flowers development by Ying-chun ZHU, Gao-peng YUAN, Sheng-feng JIA, Guo-lin AN, Wei-hua LI, De-xi SUN, Jun-pu LIU

“…In this study, the different developmental stages of flower buds of the watermelon cultivar ‘Xinteda Zhengkang 9’ were distinguished by cytological observation, and transcriptome sequencing analysis was performed subsequently. …”
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Transcriptome Analysis Provides Insights into the Safe Overwintering of Local Peach Flower Buds by Ruxuan Niu, Yongjuan Cheng, Falin Wang, Yiwen Zhang, Chenbing Wang

“…Additionally, transcriptome sequencing was conducted to analyze gene expression profiles during these stages. …”
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Integrative analysis of the metabolome and transcriptome provides insights into the mechanisms of flavonoid biosynthesis in Polygonatum. by Xiaolin Wan, Qiang Xiao

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The promising role of nanopore sequencing in cancer diagnostics and treatment by Xinming Su, Qingyuan Lin, Bin Liu, Chuntao Zhou, Liuyi Lu, Zihao Lin, Jiahua Si, Yuemin Ding, Shiwei Duan

“…Cancer arises from genetic alterations that impact both the genome and transcriptome. The utilization of nanopore sequencing offers a powerful means of detecting these alterations due to its unique capacity for long single-molecule sequencing. …”
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Integrated transcriptome and metabolome analysis provides insights into anthocyanin biosynthesis in Cichorium intybus L. by Mingzhao Zhu, Ran Zhao, Hanying Wu, Baohai Zhang, Bin Zhang, Xiangyang Han

“…Results Integrated transcriptomics and metabolomics analyses were performed to investigate the molecular basis of anthocyanin biosynthesis in chicory. …”
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Carotenoid metabolomic and transcriptomic analyses provide insights into the flower color transition in Lonicera macranthoides by Ling Ling Lv, Li Yun Li, Jian Hui Pi

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The Transcriptome Analysis Provides New Insights into Signaling for Bamboo Shoot Development of Sympodial Bamboo by Shunkai Hu, Mengran Dong, Qirong Guo

“…This study conducted a comprehensive transcriptomic analysis of sympodial bamboo (<i>Bambusa</i> sp.) across six developmental stages (S1–S6) to uncover the molecular regulatory networks governing early bamboo shoot development. …”
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Metabolomic and transcriptomic analyses provide insights into the red pigmentation in loquat (Eriobotrya japonica) peel by Yaling Zhang, Xiuping Chen, Wenbing Su, Chaojun Deng, Jimou Jiang, Shaoquan Zheng

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Targeted metabolomic and transcriptomic analyses provide insights into flavonoid biosynthesis in the grain of Foxtail millet by Zhenyan Ye, Na Qin, Senjie Fu, Huifang Zhang, Cancan Zhu, Shutao Dai, Ya Jing, Xin Wei, Chunyi Wang, Le Ju, Junxia Li

“…In this study, we integrated targeted metabolomic and transcriptomic analyses to comprehensively dissect the flavonoid biosynthesis pathway and identify genes encoding key enzymes. …”
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Genomic and transcriptomic analyses provide new insights into the complex impacts of bud mutation in peach by Guo Rui, Zhou Ping, Yan Shaobin, Jin Guang, Li Yong

“…Our results elucidated the complicated impacts of bud mutation on the genome and transcriptome provide new insights into, providing new insights into the molecular mechanism of somatic mutation in plants.…”
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Integrated transcriptomic and proteomic analyses provide insights into the biosynthesis of Lycii fructus polysaccharides from different cultivation regions by Limei Tong, Yinxiu Jiang, Xinrun Zhang, Xia Zhang, Yihao Zheng, Qiheng Zhao, Sheng Yu, Wenhua Zhang, Gang Ren, Zhanping Chen, Yuling Zhao, Sheng Guo, Hui Yan, Shulan Su, Yang Pan, Jin-ao Duan, Fang Zhang

“…The integration of transcriptomic and proteomic analyses revealed enrichment of DEGs and DEPs involved in the biosynthesis pathway of LFPs, including UDPs, AXS, and UGDH. …”
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Integrated analysis of transcriptome, small RNA, and degradome sequencing provides insights into mango anthracnose resistance by Zongling Liu, Qiufei Ouyang, Sangui Yi, Yuting Zhou, Xiaona Xie, Zhengjie Zhu

“…Overall, these miRNAs and genes provide a molecular foundation for the miRNA-mediated response to mango anthracnose stress and can be regarded as promising candidates for mango improvement.…”
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Integrated transcriptomic and metabolomic analyses provide insights into defense against Colletotrichum fructicola in octoploid strawberries by Xiaohua Zou, Yun Bai, Ying Ji, Liqing Zhang, Qinghua Gao, Xianping Fang

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Transcriptomics combined with physiological analysis provides insights into the mechanism of resistance to Coleosporium bletiae in Bletilla striata by Qiao Liu, Xi Lu, Qiaofen Wu, Zhibiao Lu, Renjun Qin, Kui Huang, Xun Zou, Ke Xia, Yanni Yang, Shuo Qiu

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Integrated Metabolome and Transcriptome Analyses Provides Insights into Ovule Abortion in <i>Camellia oleifera</i> by Yayan Zhu, Jiajuan Xu, Gang Wang, Feng Xiao, Minggang Zhang, Qinmeng Zeng, Jie Xu

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Integrated transcriptomic and metabolomic analyses provide new insights into alkaline stress tolerance in Gossypium hirsutum by Shiwei Geng, Wenju Gao, Fenglei Sun, Ni Yang, Teng Ma, Tingwei Wang, Bingyue Wang, Junhao Wang, Shuaishuai Qian, Shengmei Li, Jieyin Zhao

“…The weighted gene correlation network analysis (WGCNA) revealed 15 candidate genes associated with alkali tolerance in cotton, including 4 TFs and 4 genes related to flavonoid and anthocyanin biosynthesis.ConclusionIn conclusion, our study provides a theoretical foundation for understanding the molecular mechanisms underlying alkali tolerance in cotton and offers new gene resources for future research.…”
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