Nighttime Pistachio Consumption Alters Stool Microbiota Diversity and Taxa Abundance Compared with Education to Consume 1–2 Carbohydrate Exchanges (15–30 grams) over 12 Weeks in Ad... by Terrence M Riley, Justin Wright, Regina Lamendella, Jordan E Bisanz, Jeremy Chen See, Khushi Kanani, Penny M Kris-Etherton, Kristina S Petersen

“…Stool samples were collected at the beginning and the end of each condition and analyzed with 16S ribosomal ribonucleic acid gene sequencing. Taxonomic diversity was tested with linear mixed models (LMMs) and permutational analysis of variance of Bray–Curtis and weighted Unifrac dissimilarity indices. …”
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Exploring the biological functions and immune regulatory roles of IRAK3, TNFRSF1A, CX3CR1, and JUNB in T2DM combined with MAFLD: integrated bioinformatics and single-cell analysis by Qin Wang, Xiaoqi Li, Kaidierdan Wushoulaji, Jinyang Wang, Li Wan, Ye Yang, Xueli Gong

“…The analysis involved variance analysis, WGCNA analysis, PPI network construction, machine learning application, examination of autophagy-related gene sets, and diagnostic ROC analysis to identify and validate autophagy-related biomarkers in T2DM combined with MAFLD within an independent external dataset. …”
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Integrative QTL mapping and candidate gene analysis for main stem node number in soybean by Bire Zha, Chunlei Zhang, Rongqiang Yuan, Kezhen Zhao, Jianqiang Sun, Xiulin Liu, Xueyang Wang, Fengyi Zhang, Bixian Zhang, Sobhi F. Lamlom, Honglei Ren, Lijuan Qiu

“…In this study, a QTL mapping using SLAF sequencing and candidate gene analyses were used to determine the detailed genetic basis of MSNN across a diverse set of soybean line. …”
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The role of cellular heterogeneity in thyroid cancer: a multi-modal analysis approach with Mendelian randomization by Yichun Qian, Wei Chen, Xinyuan Chen, Shuai Cheng, Fangzhou Liu

“…Multiple MR methods (MR Egger, weighted median, inverse variance weighted, simple mode, and weighted mode) were used to enhance robustness. …”
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QTL mapping for yield contributing traits in mungbean (Vigna radiata L.) using a RIL population by Shashidhar B. Reddappa, Muralidhar S. Aski, Gyan P. Mishra, Soma Gupta, Kumbarahally M. Shivaprasad, Subodh K. Sinha, Ranjeet R. Kumar, Anirban Roy, Dwijesh C. Mishra, Shouvik Das, Prashant Anupama Mohan Pawar, Ramakrishnan Madhavan Nair, Harsh K. Dikshit

“…In this study, mapping of quantitative trait loci (QTLs) was conducted for six yield-contributing traits using a recombinant inbred line (RIL) population (166 number), developed by crossing two contrasting genotypes (Pusa Baisakhi × PMR-1). The genotyping-by-sequencing (GBS) of RILs was used to construct the genetic map using 1347 single nucleotide polymorphism (SNPs). …”
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Identification of key proteins and pathways in myocardial infarction using machine learning approaches by Chang Liu, Xing Zhang, Qian Xie, Binbin Fang, Fen Liu, Junyi Luo, Gulandanmu Aihemaiti, Wei Ji, Yining Yang, Xiaomei Li

“…Plasma samples from 48 AMI patients and 50 healthy controls (HC) were used for proteomic sequencing. Differentially expressed proteins (DEPs) were identified and analyzed for pathway enrichment. …”
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Differences in rectal fecal microbes among Hu sheep, Tibetan sheep, and their hybrid breeds and their relationship with growth traits by Dan Xu, Jiangbo Cheng, Yukun Zhang, Deyin Zhang, Kai Huang, Xiaolong Li, Yuan Zhao, Liming Zhao, Xiaobin Yang, Panpan Cui, Zongwu Ma, Huibin Tian, Xiuxiu Weng, Xiaoxue Zhang, Weimin Wang

“…We collected the rectal feces of these 9-month-old sheep and compared the differences in rectal fecal microorganisms among the three strains using 16S rDNA sequencing technology. The permutational multivariate analysis of variance test revealed significant differences in microorganisms among different strains. …”
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The bacterial communities and its relationship with physicochemical properties in an urban riparian zone adjacent to different revetments by Chunling Wang, Guangmin Liu, Yani Di, Xiaogang Wu

“…This study investigated the composition and diversity of bacterial communities in soils and sediments using 16S rRNA amplicon sequencing based on Illumina NovaSeq, and identified the key environmental drivers of bacterial community composition and diversity using correlation and ordination analysis. …”
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Cecal microbiome transplantation without antibiotic preconditioning standardizes murine microbiomes by Rye Howard-Stone, Philip Gerwin, Darien Capunitan, Mark Driscoll, Eric Jackson, Thi Dong Binh Tran, Ion Măndoiu, Elias Oziolor

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Channel estimation for MIMO SC-FDE systems via time-domain based approaches by LI Dan-ping, LIU Yi, ZHANG Hai-lin

“…Circularly orthogonal sequences were designed for the time-domain channel estimation in MIMO SC-FDE systems.Firstly,Chu sequences were chosen as the base sequences,which were added by cyclic prefix and cyclic postfix to construct circularly orthogonal training sequences.The channel impulse response can be estimated by calculating the cross-correlation between the received signal and the corresponding local sequence.Further,a new training sequence structure was presented,in which the original "long" training sequences were replaced by successive and identical "short" sequences.The corresponding estimation algorithm achieves the same performance as "long" sequences based method.Simulation results show that the proposed algorithms can offer good BER performance even at low SNR,due to the successful interference suppression between the antennas and the decrease in the noise variance.…”
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Influence of selected dosages of plastic microparticles on the porcine fecal microbiome by Ismena Gałęcka, Andrzej Rychlik, Jarosław Całka

“…The analysis of the intestinal microbiome was performed using next-generation sequencing. Alpha and beta diversity indices were compared, showing, that repetition affected only the abundance indices in the control and LD groups, but not in the HD group. …”
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Local adaptation, genetic diversity and key environmental interactions in a collection of novel red clover germplasm by A. D. Heslop, A. D. Heslop, Sai K. Arojju, Rainer W. Hofmann, John L. Ford, M. Zulfi Z. Jahufer, Anna C. Larking, Rachael Ashby, Charles A. Hefer, Ken G. Dodds, A. Saei, Jessica O’Connor, Andrew G. Griffiths

“…In this study, we selected 92 geographically diverse red clover novel germplasm populations for assessment in multi-location, multi-year field trials and for genetic diversity and genetic relationship characterization using pooled genotyping-by-sequencing (GBS). Through the development of integrated linear mixed models based on genomic, phenotypic, and environmental information we assessed variance components and genotype-by-environment (G x E) interactions for eight physiological and morphological traits. …”
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B-LMMSE-PIC iterative detection method for OTSM in high-speed mobile environment by LI Guojun, ZHENG Xiang, WANG Jie

“…Subsequently, the mean and variance of the estimated symbols in the delay-sequency domain were calculated to provide prior information for the next iteration. …”
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A Statistical Methodology for Evaluating Asymmetry after Normalization with Application to Genomic Data by Víctor Leiva, Jimmy Corzo, Myrian E. Vergara, Raydonal Ospina, Cecilia Castro

“…We apply normalization techniques, such as variance stabilizing transformations, to ribonucleic acid sequencing data with varying sample sizes to assess their effectiveness in achieving symmetric data distributions. …”
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Characteristics of an endogenous compound microbial inoculant and its immobilization effect on wastewater treatment from pig feedlots by YOU Xinxin, WANG Sheng, DU Linna

“…The high-throughput sequencing results indicated that the main microbial species of WKM belonged to Proteobacteria, Actinobacteria and Bacteroidetes at the phylum level. …”
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Oxygenation and intestinal perfusion and its association with perturbations of the early life gut microbiota composition of children with congenital heart disease by Hanna Renk, Hanna Renk, Hanna Renk, Ulrich Schoppmeier, Jennifer Müller, Vanessa Kuger, Felix Neunhoeffer, Christian Gille, Silke Peter, Silke Peter

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Identification of gray leaf spot–resistant donor lines in tropical maize germplasm and their agronomic performance under artificial inoculation by L. M. Suresh, Manje Gowda, Yoseph Beyene, Dan Makumbi, Kulai Amadu Manigben, Kulai Amadu Manigben, Kulai Amadu Manigben, Juan Burgueño, Robert Okayo, Vincent W. Woyengo, Boddupalli M. Prasanna

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Stability analysis method of high-speed milling considering feed rate influence by HAN Chentong, GUO Miaoxian, JIANG Xiaohui, WEI Shouheng, LUO Shijin

“…The variance ratio between the filtered signal sequence and the original signal sequence was used to analyze the milling stability changes of the continuous variable axial depth test, and the validity of the analysis method considering the feed rate to affect the stability of high-speed milling was verified. …”
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Holderian functional central limit theorem for linear processes by Mindaugas Juodis

“… Let (Xt)t ≥ 1 be a linear process defined by Xt =  ∑i=0∞ψi εt-1 where (ψi, i ≥ 0) is a sequence of  real numbers and (εi , i ∈ Z) is a sequence of random variables with null expectation and variance 1. …”
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Partitioned Quantum Subspace Expansion by Tom O'Leary, Lewis W. Anderson, Dieter Jaksch, Martin Kiffner

“…Diagonalising a Hamiltonian in a given Krylov subspace requires the same quantum resources in both the single step and sequential cases. We propose a variance-based criterion for determining a good iterative sequence and provide numerical evidence that these good sequences display improved numerical stability over a single step in the presence of finite sampling noise. …”
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