Investigating the effects of various irrigation methods on bacterial communities in paddy soil by Yaoben Lin, Xinyu Sun, Guangyu Li

“…The study evaluated the impact mechanisms of different irrigation methods on these bacterial communities. …”
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Molecular mechanisms of cryoablation-mediated lung cancer suppression unveiled by non-coding RNA regulatory network profiling by Xiaofan Wang, Mohan Zhang, Dianna Liu, Shicheng Lin, Yuxin Zhang, Quanwang Li

“…RNA sequencing identified differentially expressed genes (DEGs), and bioinformatics analysis constructed lncRNA/miRNA-mRNA regulatory networks, with key targets validated by RT-qPCR and Western blotting. …”
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The influence of the geroprotective cytokine on the transcriptome of young and senescent mesenchymal stem cells by Liya G. Kondratyeva, Diana K. Matveeva, Maria I. Ezdakova, Marina V. Utkina, Andrey Yu. Ratushnyy

“…Data description To evaluate transcriptomic changes induced by the potential geroprotective factor GDF11, we performed RNA sequencing on four groups of samples: ‘young’ MSCs (MmC-/GDF11-) and senescent MSCs (MmC+/GDF11-) without the addition of GDF11, as well as ‘young’ (MmC-/GDF11+) and senescent MSCs (MmC+/GDF11+) with the addition of GDF11. …”
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Mechanisms of asiaticoside in keloid treatment: Insights from a single-cell transcriptomic approach combined with network pharmacological analysis by Xiaobo Zhou, Li Lin, Canbin Dong, Jui-Ming Lin, Yiyi Gong, Wenyu Wu, Jia Huang

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Integrated multi-omics and machine learning reveal an immunogenic cell death-related signature for prognostic stratification and therapeutic optimization in colorectal cancer by Siyu Hou, Shanshan Heng, Shaozhuo Xie, Yuanchun Zhao, Jiajia Chen, Chunjiang Yu, Yuxin Lin, Yuxin Lin, Xin Qi

“…Through the integrative analysis of single-cell RNA sequencing and bulk transcriptomic data, 11 ICD-related genes with prognostic significance were identified in CRC. …”
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Identification of a deubiquitinating gene-related signature in ovarian cancer using integrated transcriptomic analysis and machine learning framework by Suwan Hu, Mengting Wang

“…Methods We conducted an integrated analysis of single-cell RNA sequencing and bulk transcriptome data from public databases. …”
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Single cell transcriptomics in blood of patients with chronic obstructive pulmonary disease by Yeonjeong Heo, Jeeyoung Kim, Seok-Ho Hong, Woo Jin Kim

“…Hence, we evaluated gene expression in the peripheral blood of patients with COPD. …”
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Indoor potted plants have little effect on office dust fungal communities by Abigail Leslie, Muhtashim Rafiq Chowdhury, Martin Täubel, Bridget Hegarty

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Pets in the household increase ocular surface microbiome exchanges between dog and owner by Suzanne Bianca Clougher, Camilla Miorelli, Annalisa Astolfi, Adriano Zaghi, Alessandra Scagliarini, Piera Versura

“…This study investigates sharing of ocular surface microbiome between dogs and owners by characterizing dog and owner ocular microbiomes, and evaluating the impact of several lifestyle factors on microbiome similarities between them.To this aim, conjunctival swabs were collected from 15 dogs and their owners for subsequent DNA extraction and 16S rRNA V3-V4 regions sequencing. …”
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3D printed magnesium silicate/β-tricalcium phosphate scaffolds promote coupled osteogenesis and angiogenesis by Lulu Wang, Mingkui Shen, Zhongxin Tang, Jun Tan, Kuankuan Li, Haijun Ma

“…In this research, we evaluated and analyzed magnesium silicate/β-Tricalcium phosphate (MS/β-TCP) scaffold on angiogenesis and bone regeneration in vitro and in vivo, and the mechanism of its action were described. …”
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Synergistic antifungal activity of minocycline as an effective augmenting agent of fluconazole against drug-resistant Candida tropicalis by Yun-Zhu Zhu, Xiang Li, Qing-Yue Zhang, Ning Yang, Ping Tian, Ding Zhang, Yi Yang, Liang Yu, Yan-Yan Liu, Ying Ye, Ya-Sheng Li, Jia-Bin Li

“…Whole-genome and RNA sequencing elucidated the synergistic mechanisms observed. …”
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Integrating bulk RNA-seq and scRNA-seq data to explore diverse cell death patterns and develop a programmed cell death-related relapse prediction model in pediatric B-ALL by Yaxin Luo, Lin Tan, Chuikai Meng, Jingyu Gao, Hongxin Chen, Ruihan Fang, Xuedong Wu

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Plasma exosomal miRNA expression and gut microbiota dysbiosis are associated with cognitive impairment in Alzheimer’s disease by Kaihao Lin, Wenxia Lin, Zhikai Guo, Cuihong Chen, Liang Chen, Xianbin Cai

“…The Mini-Mental State Examination (MMSE) was utilized to evaluate cognitive function. High-throughput sequencing was used to identify differentially expressed miRNAs in plasma exosomes, while metagenomic sequencing was employed to detect differences in the abundance of gut microbiota. …”
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High-throughput based detection of eukaryotic pathogens for sea cucumber in Dalian costal area by Xiaotong Zhu, Jinjin Wang, Xiaojun Rong, Meijie Liao, Jianlong Ge, Yingeng Wang, Lisha Guan, Bin Li, Qi Liu, Xintao Zhao

“…Concurrently, various environmental factors were measured seasonally to evaluate their potential impacts on the relative abundance of the identified pathogens. …”
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Identification of QTLs and candidate genes screening for hypoxia tolerance in Pacific white shrimp (Litopenaeus vannamei) by Xiawen Li, Yian Zhu, Zhixiang Yuan, Cunyu Duan, Yu Chen, Lei Yang, Minghui Ye, Wei Wang, Zhongduo Wang, Huapu Chen, Yulei Zhang, Changxu Tian

“…This study aimed to uncover the genetic basis of hypoxia tolerance to enhance farming efficiency and sustainability. We evaluated hypoxia tolerance in a shrimp mapping family and identified quantitative trait loci (QTLs) and candidate genes associated with this trait. …”
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Identification of circRNA expression signatures correlated with disease severity in pediatric systemic lupus erythematosus by Feng Li, Huishan Chen, Ying Tang, Suyun Cheng, Ping Zeng, Yiqian Wang

“…The potential of circRNAs as biomarkers for SLE severity was evaluated through receiver operating characteristic (ROC) analysis. …”
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Clinical Application of a Customized Gene Panel for Identifying Autism Spectrum Disorder-Associated Variants by Vittoria Greco, Donatella Greco, Simone Treccarichi, Maria Bottitta, Pinella Failla, Antonino Musumeci, Carla Papa, Valeria Chiavetta, Francesco Calì, Mirella Vinci

“…Despite the recent advantages in next-generation sequencing (NGS) technology, ASD etiology is still unclear. …”
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Transcriptomic analysis reveals shared deregulated neutrophil responses in COVID-19 and idiopathic pulmonary fibrosis by Georgios Divolis, Evgenia Synolaki, Rodoula Tringidou, Argyrios Tzouvelekis, Dimitrios T. Boumpas, Panagiotis Skendros, Ioanna-Evdokia Galani

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Copper Metabolism-Related Genes as Biomarkers in Colon Adenoma and Cancer by Zhang T, Fu Y

“…The degree of immune infiltration was evaluated using single-sample Gene Set Enrichment Analysis (ssGSEA), and the expression profiles of these biomarkers across various cell types were further characterized using single-cell RNA sequencing (scRNA-seq). …”
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Mixed infections and heteroresistance of Mycobacterium tuberculosis among multidrug-resistant tuberculosis in China: a genomic epidemiology study by Yanping Liu, Yangyi Zhang, Xiaoyu Lu, Zheyuan Wu, Minjuan Li, Rui Zhang, Yixiao Lu, Renjie Hou, Yating Ji, Qingping Zhang, Qi Jiang, Jing Li, Yuan Jiang, Yunxia Wang, Jianhui Yuan, Howard E. Takiff, Xin Chen, Xin Shen, Chongguang Yang

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