Gene mutations linked to drug-resistant epilepsy in astrocytoma by Kanitpong Phabphal, Anukoon Kaewborisutsakul, Kittinun Leetanaporn, Pongsakorn Choochuen, Pongsakorn Choochuen, Thara Tunthanathip, Raphatphorn Navakanitworakul, Surasak Sangkhathat

“…This study aimed to investigate possible correlations between genetic mutations and antiseizure resistance using whole-exome sequencing.MethodsTumor samples from a medical biobank were subjected to whole-exome sequencing, and the contribution of 64 genes from a previous report was analyzed.ResultsFifteen patients had DRE. …”
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Integrated analysis of single-cell RNA-seq and spatial transcriptomics to identify the lactylation-related protein TUBB2A as a potential biomarker for glioblastoma in cancer cells... by Yifan Xu, Chonghui Zhang, Jinpeng Wu, Pin Guo, Nan Jiang, Chao Wang, Yugong Feng

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Circulating tumor DNA profiling for non-invasive genomic analysis in Indian lung cancer patients: A real-world experience by Prerana Jha, Rohit Mishra, Asim Joshi, Neha Sharma, Minit Shah, Govind Babu, Amit Rauthan, Sewanti Limaye, Nandini Menon, Venkataramanan Ramachandran, Vanita Noronha, Prashant Kumar, Kumar Prabhash

“…The study aimed to investigate the utility of ctDNA based next generation sequencing for clinical management of lung cancer patients from India. …”
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Changes in blood monocyte functional profile in breast cancer by A. A. Fedorov, E. A. Prostakishina, M. R. Patysheva, A. A. Frolova, P. S. Iamshchikov, I. V. Larionova, M. N. Stakheyeva, M. S. Dorofeeva, O. D. Bragina, E. L. Choynzonov, J. G. Kzhyshkowska, N. V. Cherdyntseva

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Low-density SNP marker sets for genetic variation analysis and variety identification in cultivated citrus by Phuong Linh Nguyen, Jin-Kee Jung, Jee-Soo Park, Sung-Chur Sim

“…In this study, genotyping by sequencing (GBS) was conducted to identify single nucleotide polymorphisms (SNPs) for investigating genetic variation in a citrus collection. …”
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Enterobacterales use capsules, transporters, mobile genetic elements, and other evolutionary adaptations to survive antibiotics exposure in the absence of resistance genes by Masego Mmatli, Nontombi Marylucy Mbelle, Bernard Fourie, John Osei Sekyere

“…However, resistance to these two antibiotics is rising globally, and there is limited knowledge on how pathogens evolve resistance when known resistance genes are absent.Methods Whole-genome sequencing, transcriptomic profiling, and epigenomic analyses were performed. …”
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Genomic epidemiology of Mycobacterium tuberculosis in Wales by Nicole Pacchiarini, Felicity Simkin, Mark Postans, George Ahern, Jiao Song, Clare Brown, Josie Smith, Catie Williams, Matthijs Backx, Daniel Thomas, Thomas R. Connor, Christopher Williams

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A Novel Variant in Dentin Sialophosphoprotein (DSPP) Gene Causes Dentinogenesis Imperfecta Type III: Case Report by Yan Wang, Ximin Xu, Yuzhe Ding, Guohua Yuan

“…The clinical data was collected and the genomic DNA was extracted from their peripheral blood samples. Whole‐exome sequencing and Sanger sequencing were performed to screen for variations. …”
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Population Genetic Structure of Three‐Spined Sticklebacks in the St. Lawrence: A Gradient of Change by Sann Delaive, Florent Sylvestre, Amanda Xuereb, Laurie Lecomte, Brian Boyle, Christian Otis, Louis Bernatchez, Nicolas Derome

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Identification of miRnas with possible prognostic roles for HAM/TSP by Daniela Raguer Valadão de Souza, Rodrigo Pessôa, Youko Nukui, Juliana Pereira, Rosa Nascimento Marcusso, Augusto César Penalva de Oliveira, Jorge Casseb, Alberto José da Silva Duarte, Patricia Bianca Clissa, Sabri Saeed Sanabani

“…To the best of our knowledge, this study is the first to demonstrate evaluates sRNAs in HTLV-1 patients with HAM/TSP.…”
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Genetic variations suggests that Takifugu rubripes, T. chinensis, and T. pseudommus are the same species with a shared gene pool by Ji Young Lee, Kun Hee Kim, Hyuk Je Lee, Sun-Goo Hwang, Tae Sun Kang

“…Here, we provide comprehensive genetic and genomic evidence regarding their speciation and classification.MethodsWhole genome sequencing was performed on T. pseudommus, leading to the identification and development of 15 novel tandem simple sequence repeats (SSRs) from its genomic data. …”
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Genetic variants of hepatitis B virus in patients with chronic hepatitis B by E. A. Elpaeva, O. E. Nikitina, M. M. Pisareva, I. V. Shilova, V. A. Greshnjakova, M. P. Grudinin, O. I. Kiselev

“…Genotype was determined in 298 patients, sequencing of the polymerase gene fragment was performed in 80 patients.Results. …”
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Altered diversity and composition of gut microbiota in Korean children with food allergy by Minyoung Jung, Ji Young Lee, Sukyung Kim, Jeongmin Song, Sehun Jang, Sanghee Shin, Min Hee Lee, Mi Jin Kim, Jiwon Kim, Han Byul Lee, Yeonghee Kim, Kangmo Ahn, Minji Kim, Jihyun Kim

“…The V3–V4 variable regions of the 16S rRNA gene of the gut microbiome were profiled using next‐generation sequencing (Illumina, USA). Bacterial species richness, intracommunity diversity, and intergroup dissimilarity were evaluated. …”
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Genetic Diversity Estimation and Genome-Wide Selective Sweep Analysis of the Bazhou Yak by Baigao Yang, Hang Zhang, Xiaoyi Feng, Zhou Yu, Jianhua Cao, Yifan Niu, Pengcheng Wan, Gang Liu, Xueming Zhao

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A ribodepletion and tagging protocol to multiplex samples for RNA-seq based virus detection: application to the cassava virome by Daniel H. Otron, Justin S. Pita, Murielle Hoareau, Fidèle Tiendrébéogo, Jean-Michel Lett, Pierre Lefeuvre

“…Results Here, we develop a high-throughput sequencing protocol, named Ribo-M-Seq, that combines plant rRNA ribodepletion, cDNA synthesis, tagging with a 96 multiplexing scheme and Illumina sequencing. …”
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SNUH methylation classifier for CNS tumors by Kwanghoon Lee, Jaemin Jeon, Jin Woo Park, Suwan Yu, Jae-Kyung Won, Kwangsoo Kim, Chul-Kee Park, Sung-Hye Park

“…For ‘Filtered Test Data Set 1,’ the SNUH-MC achieved higher F1-micro (0.932) and F1-macro (0.919) scores compared to DKFZ-MC v11b4 (F1-micro: 0.907, F1-macro: 0.627). We evaluated the performance of three classifiers; SNUH-MC, DKFZ-MC v11b4, and DKFZ-MC v12.5, using specific criteria. …”
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Prognostic value of VEGF-A expression and mutations in oral squamous cell carcinoma by Benish Aleem, Asif Ali, Wafa Naeem, Fouzia Nawab, Muslim Khan, Taj Ali Khan, Samrina Mohammad, Ihtisham Ul Haq, Haseena Nawaz, Muhammad Imtiaz, Ali Khurram

“…Kaplan–Meier analysis evaluated the relationship between VEGF-A mutations, histoscores, and overall survival (OS). …”
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Identification and mechanism analysis of biomarkers related to butyrate metabolism in COVID-19 patients by Wenchao Zhou, Hui Li, Juan Zhang, Changsheng Liu, Dan Liu, Xupeng Chen, Jing Ouyang, Tian Zeng, Shuang Peng, Fan Ouyang, Yunzhu Long, Yukun Li

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Genomic insights into biofilm-associated virulence in extensively drug-resistant Acinetobacter baumannii by Made Rai Dwitya Wiradiputra, Piyatip Khuntayaporn, Krit Thirapanmethee, Pagakrong Wanapaisan, Mullika Traidej Chomnawang

“…From 135 non-repetitive multidrug-resistant (MDR) clinical isolates collected across Thailand, 15 XDR isolates (14 ST2 and 1 ST25) were selected for further analysis. Whole-genome sequencing (WGS) was performed to identify biofilm-associated genes and sequence polymorphisms. …”
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Fraxinellone-mediated targeting of cathepsin B leakage from lysosomes induces ferroptosis in fibroblasts to inhibit hypertrophic scar formation by Wei Xu, Hao Lv, Yaxin Xue, Xiaofeng Shi, Shaotian Fu, Xiaojun Li, Chuandong Wang, Danyang Zhao, Dong Han

“…Oxford Nanopore Technologies long-read RNA sequencing (ONT long-read RNA-seq) revealed the occurrence of ferroptosis in HSF and ferroptosis executioner-cathepsin B (CTSB). …”
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