Estimation of the Effect Size of Lactation Sequence and Calving Season on 305-Day Lactation Milk Yield with Meta Analysis Approach by Hande Küçükönder, Fatih Üçkardeş, Ercan Efe

“…In this study, the effect of the lactation sequence and the calving season, which are one of the factors influencing the milk yield in Holstein Friesian breed cows, were studied with meta-analysis method. …”
Get full text

Validation of Fuscoporia (Hymenochaetales, Basidiomycota) ITS sequences and five new species based on multi-marker phylogenetic and morphological analyses by Yoonhee Cho, Dohye Kim, Yoongil Lee, Juhwan Jeong, Shahid Hussain, Young Woon Lim

“…The multi-marker phylogeny resolved five of the twelve species complexes found in the ITS phylogeny and uncovered five new Fuscoporia species: F. dolichoseta, F. gilvoides, F. koreana, F. reticulata, and F. semicephala. The validated ITS sequences in this study may prevent further accumulation of misidentified sequences in public databases and contribute to a more accurate taxonomic evaluation of Fuscoporia species.…”
Get full text

Chromosome-level genome assembly of Triplophysa bombifrons using PacBio HiFi sequencing and Hi-C technologies by Chengxin Wang, Site Luo, Yong Song, Liting Yang, Xinyue Wang, Shengao Chen

“…The quality of this assembly is demonstrated by a scaffold N50 length of 24.25 Mb, and a genome completeness evaluation via BUSCO, which shows that 97.4% of the Vertebrata Benchmarking Universal Single-Copy Orthologs are present. …”
Get full text

Estimation of Positive‐, Negative‐, and Zero‐Sequence Current and Voltage Phasors of UIPC VSCs for Short‐Circuit Faults in Transmission Lines by Babak Bahadori, Ali Nahavandi, Mahyar Abasi

“…The approach has undergone testing and evaluation for various short circuit scenarios on both sides of the UIPC under diverse conditions. …”
Get full text

A Case of Sanfilippo Syndrome Type C and Wolfram Syndrome Type 1 and the Role of Next-Generation Sequencing in Diagnosis by Zehra Manav Yiğit, Rıdvan Savaş, Aydan Mengübaş Erbaş, Gökay Bozkurt, Ayşe Tosun

“…This case report aims to highlight the role of next-generation sequencing (NGS) in diagnosing complex phenotypes and the necessity of considering multiple genetic disorders, particularly in consanguineous populations. …”
Get full text

Intergeneric Transfer of Simple Sequence Repeat Molecular Markers for the Study of <i>Chaenomeles</i> as Fruit Crop Breeding Material by Gunārs Lācis, Katrīna Kārkliņa, Toms Bartulsons, Edīte Kaufmane

Get full text

3D Anisotropic Asymmetric Pyramid (AAP-Net) Network Model for Brain Metastases Segmentation on Multi-Sequence MRI by Omar Farghaly, Priya Deshpande

Get full text

Clinical and economic analysis of treatment sequences with prolgolimab and BRAF/MEK inhibitors in adult patients with metastatic or unresectable cutaneous melanoma by S. K. Zyryanov, K. V. Orlova

“…Objective: evaluation of the comparative pharmacoeconomic effectiveness of treatment sequences with prolgolimab as the first line and combination therapy with BRAF/MEK inhibitors as the second line versus a regimen with BRAF/MEK inhibitors as the first line and prolgolimab as the second line in adult patients with metastatic or unresectable cutaneous melanoma.Material and methods. …”
Get full text

Fault detection and assessment in an AC microgrid system using modified complex plane via positive sequence current measurement by Chinmayee Biswal, Pravat Kumar Rout, Binod Kumar Sahu, Manohar Mishra

“…To bring an optimal solution to fault detection, this article introduces a novel protection scheme utilizing a modified complex plane or α-plane strategy based on positive sequence current. The proposed approach leverages the magnitude and phase angle of the modified current ratio (MCR), specifically utilizing the complex signal retrieved from the positive sequence current at both ends of the distribution line. …”
Get full text

Whole-genome sequencing of non-typeable Haemophilus influenzae isolated from a tertiary care hospital in Surabaya, Indonesia by Made Ananda Krisna, Lindawati Alimsardjono, Korrie Salsabila, Naritha Vermasari, Wa Ode Dwi Daningrat, Kuntaman Kuntaman, Odile Barbara Harrison, Martin Christopher James Maiden, Dodi Safari

“…This study describes the serotype distributions and whole-genome sequence (WGS) data of H. influenzae isolated from hospitalized patients at Soetomo Hospital, Surabaya, Indonesia. …”
Get full text

AGMA-PESS: a deep learning-based infant pose estimator and sequence selector software for general movement assessment by Ameur Soualmi, Ameur Soualmi, Olivier Alata, Christophe Ducottet, Anne Petitjean-Robert, Aurélie Plat, Hugues Patural, Hugues Patural, Antoine Giraud, Antoine Giraud

“…The General Movement Assessment (GMA) is a validated evaluation of brain maturation essential to shaping early individual developmental trajectories of preterm infants. …”
Get full text

Radiation enteritis associated with temporal sequencing of total neoadjuvant therapy in locally advanced rectal cancer: a preliminary study by Chen-ying Ma, Yi Fu, Lou Liu, Jie Chen, Shu-yue Li, Lu Zhang, Ju-ying Zhou

“…Features were selected via statistical evaluation and least absolute shrinkage and selection operator regression. …”
Get full text

Development of cleaved amplified polymorphic sequence marker for powdery mildew resistance in Korean malting barley using QTL-seq by Jin-Cheon Park, Young-Mi Yoon, Chang-Hyun Lee, On-Sook Hur, Sang-Min Kim

“…We conducted artificial crossing, genomic DNA extraction, phenotypic evaluation, QTL-seq analysis, and cleaved amplified polymorphic sequence (CAPS) marker development. …”
Get full text

Rare Naegleria fowleri meningoencephalitis diagnosed via combined molecular biology and metagenomic sequencing techniques: a case report by Yuanjing Kou, Jiayao Zhang, Dan Wang, Lidan Cui, Qi Sun, Yanqi Lv, Ying Liu, Zhiquan He, Yuling Zhao, Hongwei Zhang, Jun Su, Yaobao Liu, Yan Deng

Get full text

LiSENCE: A Hybrid Ligand and Sequence Encoder Network for Predicting CYP450 Inhibitors in Safe Multidrug Administration by Abena Achiaa Atwereboannah, Wei-Ping Wu, Sophyani B. Yussif, Muhammed Amin Abdullah, Edwin K. Tenagyei, Chiagoziem C. Ukuoma, Yeong Hyeon Gu, Mugahed A. Al-antari

“…Data were outsourced from three databases: ligand/compound SMILES strings from the PubChem and ChEMBL databases and protein target sequences from the Protein Data Bank (PDB) for five CYP isoforms: 1A2, 2C9, 2C19, 2D6, and 3A4. …”
Get full text

Multi-sequence MRI based radiomics nomogram for prediction expression of programmed death ligand 1 in thymic epithelial tumor by Jie Shen, Lantian Zhang, Shuke Li, Xiaofei Mu, Tongfu Yu, Wei Zhang, Yue Yu, Jing He, Wen Gao

Get full text

Complete reference genome and pangenome improve genome-wide detection and interpretation of DNA methylation using sequencing and array data by Zheng Dong, Joanne Whitehead, Maggie Fu, Julia L. MacIsaac, David H. Rehkopf, Luis Rosero-Bixby, Michael S. Kobor, Keegan Korthauer

“…The pangenome reference further expands CpG calling by 4.5% in short-read sequencing data and identifies cross-population and population-specific unambiguous probes in DNAm arrays, owing to its improved representation of genetic diversity. …”
Get full text

Optimizing fungal DNA extraction and purification for Oxford Nanopore untargeted shotgun metagenomic sequencing from simulated hemoculture specimens by Nattapong Langsiri, Wieland Meyer, Laszlo Irinyi, Navaporn Worasilchai, Nuttapon Pombubpa, Thidathip Wongsurawat, Piroon Jenjaroenpun, J. Jennifer Luangsa-ard, Ariya Chindamporn

“…Evaluation of the developed DNA extraction protocol on simulated clinical hemocultures revealed that the obtained DNA sequences exceed 10 kb in length, enabling a highly efficient sequencing run with over 80% active pores. …”
Get full text

Functional implications of respiratory syncytial virus F sequence variability: a comparative analysis using contemporary RSV isolates by Kim Stobbelaar, Lotte Jacobs, Francisco I. Serrano-Cano, Axelle Fransen, Winke Van der Gucht, Annemieke Smet, Benedicte Y. De Winter, Paul Cos, Winnok de Vos, Kim Van Hoorenbeeck, Stijn Verhulst, Peter L. Delputte

“…Surveillance should include both sequencing data and an evaluation of sensitivity to prophylactic antibodies, using contemporary clinical isolates.IMPORTANCERespiratory syncytial virus (RSV) is a major cause of respiratory infections in young children worldwide. …”
Get full text

Choosing the most suitable NGS technology to combine with a standardized viral enrichment protocol for obtaining complete avian orthoreovirus genomes from metagenomic samples by Sonsiray Álvarez-Narváez, Sonsiray Álvarez-Narváez, Telvin L. Harrell, Islam Nour, Sujit K. Mohanty, Steven J. Conrad

“…Since viruses are obligate intracellular pathogens, sequencing their genomes results in metagenomic data from both the virus and the host. …”
Get full text