Constructions of Low-Hit-Zone Frequency-Hopping Sequence Set With Strictly Optimal Periodic Partial Hamming Correlation by Chun Xie, Changyuan Wang

“…In this paper, based on q-ary m-sequence and its decimated sequence, two classes of low-hit-zone frequency-hopping sequence set (LHZ FHS set) with new flexible parameters are constructed. …”
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Is It Time to Assess T Cell Clonality by Next-Generation Sequencing in Mature T Cell Lymphoid Neoplasms? A Scoping Review by Rina Kansal

“…One additional study compared long-read sequencing with NGS for TRG and TRB rearrangements. …”
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VALIDATION OF SINGLE NUCLEOTIDE POLYMORPHISMS IN RIBOSOMAL DNA INTERNAL TRANSCRIBED SPACER SEQUENCES OF WOLFFIA MICROSCOPICA (GRIFF). KURZ by Thi Nhu Phuong Hoang

“…The purpose of this study is to identify single nucleotide polymorphisms (SNPs) in the internal transcribed spacer sequence (ITS) region of 10 Wolffia microscopica accessions. …”
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Diagnostic utility of single-locus DNA methylation mark in Sotos syndrome developed by nanopore sequencing-based episignature by Takeshi Mizuguchi, Nobuhiko Okamoto, Taiki Hara, Naoto Nishimura, Masamune Sakamoto, Li Fu, Yuri Uchiyama, Naomi Tsuchida, Kohei Hamanaka, Eriko Koshimizu, Atsushi Fujita, Kazuharu Misawa, Kazuhiko Nakabayashi, Satoko Miyatake, Naomichi Matsumoto

“…These signatures have generally been tested using methylation arrays, requiring additional experimental and evaluation costs. As an alternative, long-read sequencing can simultaneously and accurately evaluate genetic and epigenetic changes. …”
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Exploring the microorganisms biodiversity associated with sponge species in the red sea through 18S ribosomal RNA gene sequencing by Samah S. Abuzahrah

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Development of Problem-Based Learnıng-Based Modules on Sequence and Series Material for Grade XI at SMA Negeri Semangus by Ririn Saryani, Nur Fitriyana, As Elly

“…This research aims to produce a Mathematics Module based on Problem-Based Learning (PBL) on sequence and series material for grade XI SMA Negeri (State High School) Semangus that is valid, practical, and has potential effects. …”
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Transcriptome sequencing, and rapid development and application of SNP markers for the legume pod borer Maruca vitrata (Lepidoptera: Crambidae). by Venu M Margam, Brad S Coates, Darrell O Bayles, Richard L Hellmich, Tolulope Agunbiade, Manfredo J Seufferheld, Weilin Sun, Jeremy A Kroemer, Malick N Ba, Clementine L Binso-Dabire, Ibrahim Baoua, Mohammad F Ishiyaku, Fernando G Covas, Ramasamy Srinivasan, Joel Armstrong, Larry L Murdock, Barry R Pittendrigh

“…Mutation data derived from transcriptome sequencing is an expeditious and economical source for genetic markers that allow evaluation of ecological differentiation.…”
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Off-target sequence variations driven by the intrinsic properties of the Cas-sgRNA-DNA complex in genome editing. by Celine Kurniawan, Takeshi Itoh

“…We developed a method to assess the statistical significance of sequence pattern similarity and diversity between off-target sites. …”
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A crop sequence dataset of the German federal state of North Rhine-Westphalia from 2019–2024Zenodo by Christoph Pahmeyer, Till Kuhn, Hugo Storm

“…This dataset enables detailed analyses of crop sequences, assessment of agricultural practices, and evaluation of environmental impacts while maintaining the spatial integrity of management units, making it particularly suitable for agricultural modeling, ex-post policy assessment, and farm management studies. …”
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Detection of MDM2 amplification by shallow whole genome sequencing of cell-free DNA of patients with dedifferentiated liposarcoma. by Joanna Przybyl, Lien Spans, Kristen Ganjoo, Nam Bui, David Mohler, Jeffrey Norton, George Poultsides, Maria Debiec-Rychter, Matt van de Rijn

“…In this study, we performed shallow whole genome sequencing of cell-free DNA extracted from 10 plasma samples from 3 patients with DDLPS and 1 patient with WDLPS. …”
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Improving Soybean Seed Sucrose Content using TILLING by Sequencing Analyses of The Soybean Sucrose Synthase Gene Family by Dounya Knizia, Erdem Anil, Yasser Salhi, Haiying Shi, Abdelhalim El Baze, My Abdelmajid Kassem, Naoufal Lakhssassi, Henry T. Nguyen, Khalid Meksem

“…In this study, we characterized twelve sucrose synthase genes through a comprehensive phylogenetic tree analysis, synteny analysis, gene structure evaluation, and variations in conserved domains. Additionally, we conducted a TILLING by Sequencing approach to identify EMS mutations in the characterized Sucrose synthase genes. …”
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Unraveling Phylogenetic Relationships via <em>A. carbonarius</em> and <em>A. tubingensis</em> Sequence Analyses by Sabah Ben Fredj Melki, Ehi Sheena Omoregie, Ahmed Mliki

“…The phylogenetic analysis of the aspergilli genome structure provided a quantitative evaluation of the forces driving long-term eukaryotic genome evolution. …”
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Joint fusion of sequences and structures of drugs and targets for identifying targets based on intra and inter cross-attention mechanisms by Xin Zeng, Guang-Peng Su, Wen-Feng Du, Bei Jiang, Yi Li, Zi-Zhong Yang

“…MM-IDTarget integrates some cutting-edge deep learning techniques such as graph transformer, multi-scale convolutional neural networks (MCNN), and residual edge-weighted graph convolutional network (EW-GCN) to extract sequence and structure modal features of drugs and targets. …”
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4D Memristive Hyperchaotic System for Secure Image Encryption Using Non-Associative Algebraic-Chaotic Sequences by Tanzeela Anwar, Nazli Sanam, Sarah Abu Ghazalah, Mansoor Alghamdi, Ibrahim S. Alkhazi

“…This method generates algebraic-chaotic sequences by mixing non-associative algebraic operations with chaotic sequences, significantly broadening the key space. …”
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Development of whole-genome simple sequence repeat markers in Proto-salanx chinensis and their test in different ecological populations by TANG Xuemei, ZHOU Yanfeng, FANG Di’an, LUO Yuting, ZHANG Minying, JIANG Shulun, ZHANG Xizhao, PENG Fei, YOU Yang

“…Krait software was used to analyze the distribution characteristics of perfect microsatellites in the whole genome of Protosalanx chinensis, which was published in 2020 with a higher degree of splicing, and to develop polymorphic microsatellite DNA (also known as simple sequence repeat) markers. The results showed that a total of 587 554 perfect microsatellite loci were obtained in the whole genome of P. chinensis, with a total sequence length of 11 803 017 bp, accounting for 2.53% of the whole genome length. …”
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The Role of Viral Pathogens in Horse Respiratory Diseases: A Cytological and Molecular Approach Using Next-Generation Sequencing by Maurizio Mazzei, Benedetta Sorvillo, Micaela Sgorbini, Francesca Bindi, Alice Perelli, Fulvio Laus

“…Metagenomic next-generation sequencing is a transformative method that allows the sequencing of all genomes present in a sample. …”
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A privacy-preserving dependable deep federated learning model for identifying new infections from genome sequences by Sk. Tanzir Mehedi, Lway Faisal Abdulrazak, Kawsar Ahmed, Muhammad Shahin Uddin, Francis M. Bui, Li Chen, Mohammad Ali Moni, Fahad Ahmed Al-Zahrani

“…Abstract The traditional molecular-based identification (TMID) technique of new infections from genome sequences (GSs) has made significant contributions so far. …”
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Genome-wide development of simple sequence repeat (SSR) markers at 2-Mb intervals in lotus (Nelumbo Adans.) by Fengluan Liu, Lin Xi, Naifeng Fu

“…After that, high polymorphism SSR molecular markers were mined from each 2n + 0.5 Mb site on each chromosome (e.g., Chr.1-2.5, 4.5, 6.5 Mb) through four steps: online primer design, primer pair evaluation, agarose gel electrophoresis testing using six Asian lotus, one American lotus, and two their hybrids, and DNA sequence alignment. …”
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Value of three-dimensional inversion-recovery with real reconstruction sequence using an ultralong repetition time for endolymphatic hydrops by Menglong ZHAO, Huaili JIANG, Shujie ZHANG, Zhuang LIU, Kai LIU, Di WU, Xinsheng HUANG, Mengsu ZENG

“…Images of the two sequences were qualitativly evaluated and compared. …”
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Fetal brain injury in the pump twin of a TRAP sequence with favorable postnatal outcome: a case report by Wirada Dulyaphat, Chaniga Jiratchayamaethasakul, Supakorn Chaiyakarn, Waranyu Lertrat, Chayada Tangshewinsirikul, Chaiyos Khongkhatithum

“…The patient was referred to a specialized ultrasonography clinic, where re-evaluation confirmed a diagnosis of TRAP sequence. Transvaginal neurosonography and fetal MRI also revealed brain injury with raised suspicion of cortical malformation in the pump twin. …”
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