Gene-based sequencing identifies lipid-influencing variants with ethnicity-specific effects in African Americans. by Amy R Bentley, Guanjie Chen, Daniel Shriner, Ayo P Doumatey, Jie Zhou, Hanxia Huang, James C Mullikin, Robert W Blakesley, Nancy F Hansen, Gerard G Bouffard, Praveen F Cherukuri, Baishali Maskeri, Alice C Young, Adebowale Adeyemo, Charles N Rotimi

“…By beginning our study with the sequence variation present in AA individuals, investigating local ancestry effects, and seeking replication in WA, we were able to comprehensively evaluate the role of a set of candidate genes in serum lipids in AA.…”
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Accurate and rapid single nucleotide variation detection in PCSK9 gene using nanopore sequencing by Ilaria Massaiu, Vincenza Valerio, Valentina Rusconi, Valentina Rusconi, Francesca Bertolini, Donato De Giorgi, Veronika A. Myasoedova, Paolo Poggio, Paolo Poggio

“…Oxford Nanopore Technologies (ONT) offers a cost-effective platform for long-read sequencing, yet its routine use in clinical diagnostics remains under evaluation. …”
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Adaptive Fuzzy C-Means with logit boost distributed clustering for cancer detection with protein sequences by K. Thenmozhi, M. Pyingkodi, V. S. Prakash, Kripa Josten, S. Manju Priya, J. Vennila

“…In contrast, the AFC-LBDC technique groups similar protein sequences to get better accuracy in cancer detection. …”
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Bioinformatic analysis of nucleotide sequences of the acetolactate synthase (als) gene of different members of the Poaceae family by А. В. Кирієнко, Н. Л. Щербак, Ю. В. Симоненко

“…The lowest homo­logy was for maize and aleppo grass at 83.3%. Evaluation of the nucleotide sequence 1729–1749 showed no complete homology at the 100% level. …”
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Skin Staphylococcus aureus detection and relationship to atopic dermatitis outcomes using culture and metagenomic sequencing by Arya Dahal, Wan Chi Chang, Elisabet Johansson, Brittany Grashel, David Morgan, Lindsey Williams, Mindy Hammonds, Seiya Sachdeva, Dan Spagna, Latha Satish, Jocelyn M. Biagini, Lisa J. Martin, David B. Haslam, Nicholas J. Ollberding, Gurjit K. Khurana Hershey

“…Studies comparing metagenomic shotgun sequencing (MSS) and culture-based methods in SA detection and relationships to AD outcomes are lacking. …”
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Pig and quail CpG methylation datasets from short and long read sequencing technologies by Paul Terzian, Céline Vandecasteele, Joanna Lledo, Rémy-Félix Serre, Jules Sabban, Claire Kuchly, Frédérique Pitel, Sophie Leroux, Julie Demars, Nathalie Iannuccelli, Katia Fève, Michèle Bonnet, Christine Gaspin, Denis Milan, Carole Iampietro, Christophe Klopp, Cécile Donnadieu

“…Abstract CpG methylation, a key epigenetic mark involved in gene regulation, development, and other biological processes, is commonly analyzed using Whole-Genome Bisulfite Sequencing (WGBS). However, bisulfite treatment causes significant DNA degradation. …”
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Identification of genetic determinants of antibiotic resistance in Helicobacter pylori isolates in Vietnam by high-throughput sequencing by Phuc Hoang Bui, Trang Ngoc Minh Cao, Thanh Truc Tran, Takashi Matsumoto, Junko Akada, Yoshio Yamaoka

“…The primary resistance of H. pylori to commonly used antibiotics was studied, and high-throughput next-generation sequencing (NGS) was employed to discover genetic determinants of resistance using a reference-based approach. …”
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EVOLUTIVE AN REGRESSIVE SOIL SEQUENCES FOR ASSESSMENT OF SOIL DEGRADATION IN DESERTIFIED AREAS OF CANARY ISLANDS (SPAIN) by J.A. Guerra, C.D. Arbelo, A. Rodríguez Rodríguez, Rodríguez, J.L. Mora, J.S. Notario

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RNA Sequencing of Formalin-Fixed, Paraffin-Embedded Specimens for Gene Expression Quantification and Data Mining by Yan Guo, Jie Wu, Shilin Zhao, Fei Ye, Yinghao Su, Travis Clark, Quanhu Sheng, Brian Lehmann, Xiao-ou Shu, Qiuyin Cai

“…RNAs extracted from 4 samples were treated with the two rRNA depletion methods in duplicate and sequenced (N=16). We evaluated their reducibility, ability to detect RNA, and ability to molecularly subtype these triple negative breast cancer specimens. …”
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A Decision Model for the Order Sequence and Delivery Date Problem in Companies Manufacturing According to the Order by Alperen Calapoğlu, Melike Şişeci Çeşmeli, İhsan Pençe, Özlem Çetinkaya Bozkurt

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Research note: Whole-genome sequencing revealed genomic diversity dynamics in duck conserved populations by Yu-Ze Yang, Zhong-Tao Yin, Xiao-Ran Lin, Chun-Ying Zhao, Fang-Xi Yang, Fei-Fan Chen, Zhuo-Cheng Hou

“…The purpose of this study was to comprehensively analyze the genetic diversity of the Pekin duck conserved population with five generations and to evaluate the effectiveness of the current conservation strategy. …”
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Single-cell sequencing systematically analyzed the mechanism of Emdogain on the restoration of delayed replantation periodontal membrane by Yanyi Liu, Yuhao Peng, Lanhui Chen, Yangfan Xiang, Ximu Zhang, Jinlin Song

“…Tooth loss rate and degree of loosening were evaluated at 4 and 8 weeks. Micro-CT, HE staining, TRAP staining, and immunofluorescence staining were evaluated to assess EMD’s efficacy. …”
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Deep Learning Approach for Estimating Workability of Self-Compacting Concrete from Mixing Image Sequences by Zhongcong Ding, Xuehui An

“…The performance of the method is evaluated using the testing set. The results indicate that the proposed method could potentially be used to automatically estimate SCC workability.…”
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Sensitive diagnosis of paucibacillary tuberculosis with targeted next-generation sequencing: a molecular diagnostic study by Yu Chen, Lichao Fan, Zhong Ren, Yanhong Yu, Jiao Sun, Miaoran Wang, Chang Liu, Ying Zhang, Shuihua Lu, Xuhui Liu, Zhen Huang

“…Abstract Background Targeted next-generation sequencing (tNGS) enables high-performance tuberculosis (TB) diagnosis and drug resistance prediction directly from clinical samples. …”
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Exploring the mechanism of Naringenin in the treatment of hepatocellular carcinoma based on mRNA sequencing and experimental validation by Zheng Zhang, Haoran Wang, Xin Liu, Meng He, Yujia Lin

“…Wound healing and transwell tests were employed to evaluate the migratory and invasive capabilities of the cells, respectively. …”
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Zero-sequence controller requirements and comparison for a delta-CHB STATCOM under unbalanced operation by Iosu Marzo, Ignacio Muguruza, Alain Sanchez-Ruiz, Gonzalo Abad, Hector Fernandez-Rebolleda, Juan José Costa-Iriarte, Jon Andoni Barrena

“…However, under unbalanced voltage and/or current conditions, zero-sequence current needs to be injected to guarantee dc-link capacitor voltage balancing. …”
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Application of Metagenomic and Targeted Next-Generation Sequencing in Diagnosis of Pulmonary Tuberculosis in Bronchoalveolar Lavage Fluid by Yang Z, Liu Q, Hu Y, Geng S, Ni JX

“…Mixed microbial species were identified from the BALF using mNGS and tNGS, and the pros and cons of tNGS were evaluated against mNGS.Results: Of the 202 patients evaluated, 94 were diagnosed with PTB. …”
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Amniotic Band Sequence in an Intrauterine Fetal Demise at 17 weeks of Pregnancy: A case report by Vladimir Bartos

“… Amniotic band sequence is a rare disorder characterised by various congenital abnormalities due to constrictions of certain parts of the fetal body by fibrous bands derived from the amniotic sac. …”
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A semi-automatic cell type annotation method for single-cell RNA sequencing dataset by Wan Kim, Sung Min Yoon, Sangsoo Kim

“…Single-cell RNA sequencing (scRNA-seq) has been widely applied to provide insights into the cell-by-cell expression difference in a given bulk sample. …”
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Discover the road sequences of bus lines using bus stop information and historical bus locations by Ying Zhou, Guiyuan Jiang, Guifeng Jiang

“…Discovering the road sequences traveled by the bus lines is of great importance for public transport management, such as bus journey time prediction and multimodal travel route recommendation, as the road sequence provides important information on roadway characteristics such as the number of intersections and traffic signals, road type, and number of lanes. …”
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