Impact of metagenomics next-generation sequencing on etiological diagnosis and early outcomes in sepsis by Feixiang Xu, Chen Chen, Su Lu, Mingming Xue, Hailin Ding, Yanli Song, Yun Zhang, Keyu Sun, Lunxian Tang, Wei Wang, Meitang Wang, Yan Tang, Dingyu Tan, Chenling Yao, Dongwei Shi, Enqiang Mao, Mian Shao, Youguo Ying, Chunmei Zhou, Lihong Huang, Hu Peng, Zhongshu Kuang, Sanqiang Wang, Qingbian Ma, Si Sun, Dongfeng Guo, Tianwen Gu, Bin Yang, Linhao Ma, Chengjin Gao, Xiaoye Lu, Hong Zhang, Ruilan Wang, Chaoyang Tong, Zhenju Song

“…Abstract Background Clinical implications of metagenomics next-generation sequencing (mNGS) in sepsis have not been fully evaluated. …”
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Databank of genomic sequences of pathogenic microorganisms and its role in the implementation of epidemiological surveillance by T. A. Semenenko, V. G. Akimkin, T. V. Solomay

“…To deposit information obtained in the course of molecular genetic studies in Russia, the Virus Genome Aggregator of Russia (VGARus) databank was created.Aim. To evaluate data on the variability of genetic sequences of the Epstein-Barr virus (EBV), obtained as a result of Russian studies, and the possibility of their integration into the VGARus database forsubsequent use in epidemiological surveillance.Material and methods. …”
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Targeted next-generation sequencing-based detection of microsatellite instability in colorectal carcinomas. by Yunbeom Lee, Ji Ae Lee, Hye Eun Park, Hyojun Han, Yuhnam Kim, Jeong Mo Bae, Jung Ho Kim, Nam-Yun Cho, Hwang-Phill Kim, Tae-You Kim, Gyeong Hoon Kang

“…In the present study, we developed a computational method and panel markers to assess microsatellite instability (MSI) using a targeted next-generation sequencing (NGS) platform and compared the performance of our computational method, mSILICO, with that of mSINGS to detect MSI in CRCs. …”
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Immunomodulatory effects of PACAP sequence modifications in juvenile white shrimp Litopenaeus vannamei by Jesús Luis Betancourt, Tania Rodríguez-Ramos, Laura Rivera, Yamila Carpio, Mario Pablo Estrada, Laida Ramos, Brian Dixon

“…In this study, the immunomodulatory effects of C. gariepinus PACAP-38 and four PACAP sequence modified peptides in juvenile L. vannamei were evaluated. …”
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Characterization of Streptococcus pneumoniae isolates from India with special reference to their sequence types by Malini Shariff, Jyoti Choudhary, Shazia Zahoor, Monorama Deb

“…In the present study we evaluated antimicrobial susceptibilities, serotypes, and sequence types of pneumococcal isolates recovered in New Delhi, India. …”
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Single-cell sequencing reveals the role of SALL4 in cervical cancer development by Bao Tonghui, Li Wufen, Qi Lin

“…Methods Single-cell sequencing technology was utilized to analyze the cellular characteristics of cervical cancer tumor cell populations, and transcriptomic data were integrated to assess the differential expression of SALL4. …”
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Deciphering the Population Characteristics of Leiqiong Cattle Using Whole-Genome Sequencing Data by Yingwei Guo, Zhihui Zhao, Fei Ge, Haibin Yu, Chenxiao Lyu, Yuxin Liu, Junya Li, Yan Chen

“…In this study, we conducted genomic comparisons using whole-genome sequencing data from the two subgroups of Leiqiong cattle and three commercial breeds to assess their population structures. …”
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Clinical Utility of Next-Generation Sequencing-Based Molecular Panel in Thyroid Nodules by Hetashvi Gondaliya, Suruchi Aggarwal, Kranti Khadilkar, Shivaprasad S. Kumbenahalli, Basavaraj Sooragonda, Anirudh J. Shetty, Vijay Pillai, Vidhya Bhushan, Vivek Shetty, Yogesh Dokhe, Akhila Lakshmikantha, Subramanian Kannan

“…Despite being recommended by the ATA 2015 guidelines, the utility of molecular testing in India is hindered by challenges related to availability and cost-effectiveness, thereby limiting its widespread adoption. We aimed to evaluate the clinical utility of next-generation sequencing (NGS)-based molecular testing in Indian patients with ITNs. …”
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A method for comparing MRI sequences of the knee for segmentation based on morphological features. by Yunsub Jung, Morten Bilde Simonsen, Michael Skipper Andersen

“…<h4>Background</h4>In magnetic resonance imaging (MRI) segmentation research, the choice of sequence influences the segmentation accuracy. This study introduces a method to compare sequences. …”
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Exploring the impact of deubiquitination on melanoma prognosis through single-cell RNA sequencing by Su Peng, Jiaheng Xie, Xiaohu He

“…Thus, identifying novel prognostic biomarkers and therapeutic targets is essential.MethodsWe utilized single-cell RNA sequencing data (GSE215120) from the Gene Expression Omnibus (GEO) database, preprocessing it with the Seurat package. …”
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Molecular sequencing and phylogenetic analysis of bioaerosols in hospital wards with different ventilation conditions by Afzal Nimra, Zulfiqar Ali, Sikandar Sultan, Zaheer Ahmad Nasir, Safdar Sidra, Ali Hussain

“…., centrally air-conditioned and non-central air-conditioned) in determining bioaerosols load was evaluated by using both culture and non-culture based (Flow cytometry) approaches. …”
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Whole Genome Sequencing Reveals Clade‐Specific Genetic Variation in Blacklegged Ticks by Jacob Cassens, Adela S. Oliva Chávez, Danielle M. Tufts, Jianmin Zhong, Christopher Faulk, Jonathan D. Oliver

“…In this study, we performed whole genome nanopore sequencing of individual (n = 1) blacklegged ticks across their geographical range (Minnesota, Pennsylvania, and Texas) to evaluate genetic divergence among populations. …”
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THERAPEUTIC IMPLICATIONS OF TARGETED SEQUENCING AND miRNA-SEQ OF B CELL LYMPHOMAS by Esra Esmeray Sönmez, Tevfik Hatipoğlu, Xiaozhou Hu, Hongling Yuan, Ayça Erşen Danyeli, Ayla Anar Arıcı, Ahmet Şeyhanlı, Zuhal Önder Siviş, Bengü Demirag, Eda Ataseven, Dilek İnce, Zekiye Altun, Safiye Aktaş, İnci Alacacıoğlu, Tuğba Önal Süzek, Nazan Özsan, Taner Kemal Erdağ, Elvan Çağlar Çıtak, Sermin Özkal, Mehmet Ali Özcan, Nazan Çetingül, Erdener Özer, Tezer Kutluk, Nur Olgun, Can Küçük

“…Objective: Next-generation sequencing (NGS)-based approaches facilitated the identification of genomic and transcriptomic alterations associated with the development of B-cell lymphomas. …”
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Streamlining of Simple Sequence Repeat Data Mining Methodologies and Pipelines for Crop Scanning by Subramaniam Geethanjali, Palchamy Kadirvel, Mahender Anumalla, Nithyananth Hemanth Sadhana, Anandan Annamalai, Jauhar Ali

“…Over the past 50 years, DNA markers have rapidly changed, moving from hybridization-based and second-generation-based to sequence-based markers. Simple sequence repeats (SSRs) are the ideal markers in plant breeding, and they have numerous desirable properties, including their repeatability, codominance, multi-allelic nature, and locus specificity. …”
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Re-sequencing expands our understanding of the phenotypic impact of variants at GWAS loci. by Susan K Service, Tanya M Teslovich, Christian Fuchsberger, Vasily Ramensky, Pranav Yajnik, Daniel C Koboldt, David E Larson, Qunyuan Zhang, Ling Lin, Ryan Welch, Li Ding, Michael D McLellan, Michele O'Laughlin, Catrina Fronick, Lucinda L Fulton, Vincent Magrini, Amy Swift, Paul Elliott, Marjo-Riitta Jarvelin, Marika Kaakinen, Mark I McCarthy, Leena Peltonen, Anneli Pouta, Lori L Bonnycastle, Francis S Collins, Narisu Narisu, Heather M Stringham, Jaakko Tuomilehto, Samuli Ripatti, Robert S Fulton, Chiara Sabatti, Richard K Wilson, Michael Boehnke, Nelson B Freimer

“…By sequencing the coding sequence and 5' and 3' untranslated regions of 78 genes at 17 GWAS loci associated with one or more of six metabolic traits (serum levels of fasting HDL-C, LDL-C, total cholesterol, triglycerides, plasma glucose, and insulin), and conducting both single-variant and gene-level association tests, we obtained a more complete understanding of phenotype-genotype associations at eight of these loci. …”
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Juvenile Dermatomyositis Outcome Prediction Using Magnetic Resonance Imaging STIR Sequences by Sabin George, Suma Balan, Jasica Joy Thottiyil, Kumar Abhinav

“…We explored a Short Tau Inversion Recovery (STIR) sequence Magnetic Resonance Imaging (MRI) protocol as a non-invasive baseline investigation to assess the present outcome in a cohort of JDM patients. …”
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Dose sensitivity of MAGIC-f polymer gel using different MRI sequences by Nícollas Gonçalves Cavedini, Ricardo Meurer Papaléo, Nícolas Borges Jobim, Phelipi Nunes Schuck, Fabrício Nery Garrafiel, Elisa Magno Nunes de Oliveira, Marcelo Menna Barreto Schwarcke, Alex Cristóvão Holanda de Oliveira, Paulo Rauli Rafeson Vasconcelos Caribé, Ana Maria Marques da Silva

“…This study aims to evaluate the dose sensitivity of MAGIC-f  gel irradiated by high-energy photon beams, comparing quantification using different MRI sequences. …”
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Quantification of Lactobacillus spp. and Bifidobacterium spp. in hospitalized children with Pierre Robin Sequence by Narciso Almeida Vieira, Gisele da Silva Dalben, Beatriz Pereira Cestari, Silvia Toledo Talarico, Carla R. Taddei

“…Participants: Six children, one male and five females, who were hospitalized for the management of their condition, were evaluated during the first (M1) and second (M2) months of life. …”
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Seismic performance of K-EBF structures considering aftershock sequences and link failure by Haifeng YU, Yifan ZHU, Bin FANG, Tianjiao JIN, Kang MA, Yong LI

“…Aiming at the problems that the failure of members can change the stress state of the structure, and the building may be severely damaged or even collapsed due to aftershock sequences, the effect of aftershock sequences and link failure on the seismic performance of K-eccentrically braced steel frames (K-EBF) was investigated. …”
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Complete Genome Characterization of Canine Adenovirus From Türkiye With Next‐Generation Sequencing by Secil Sevinc Temizkan, Mehmet Cevat Temizkan

“…To address this gap, we analysed next‐generation sequencing data obtained from our previous study to provide the complete genome sequence of the canine adenovirus‐2 strain. …”
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