Advancing plant metabolic research by using large language models to expand databases and extract labeled data by Rachel Knapp, Braidon Johnson, Lucas Busta

“…Abstract Premise Recently, plant science has seen transformative advances in scalable data collection for sequence and chemical data. These large datasets, combined with machine learning, have demonstrated that conducting plant metabolic research on large scales yields remarkable insights. …”
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Optimization of hemolysin formation in Alcaligenes species isolated from abattoir wastewater samples in Akure, Ondo State, Nigeria by Olubukola Olayemi Olusola-Makinde, Daniel Juwon Arotupin, Anthony Ifeanyi Okoh

“…The genus Alcaligenes was assigned to the test organisms after analysis of their 16S rRNA gene sequence with accession numbers: MF498824, MF498825 and MF498827 accordingly. …”
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Molecular Detection of CRISPR-Cas System in Staphylococcus epidermidis Isolated from Different Sources in Iraq by Thuraya Hashosh et al

“…  The partial sequencing of the 16s rRNA gene was evaluated and compared with those in the Gene Bank to find differences in the sequence using the BLAST tool (http://www.ncbi.nlm.nih.gov).…”
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Comparative proteomic analysis to annotate the structural and functional association of the hypothetical proteins of S. maltophilia k279a and predict potential T and B cell targets... by Md Muzahid Ahmed Ezaj, Md Sajedul Haque, Shifath Bin Syed, Md Shakil Ahmed Khan, Kazi Rejvee Ahmed, Mst Tania Khatun, S M Abdul Nayeem, Golam Rosul Rizvi, Mohammad Al-Forkan, Laila Khaleda

“…At first, the whole proteome sequence of the organism was retrieved and stored. …”
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ENZYMAP: exploiting protein annotation for modeling and predicting EC number changes in UniProt/Swiss-Prot. by Sabrina de Azevedo Silveira, Sabrina de Azevedo Silveira, Raquel Cardoso de Melo-Minardi, Carlos Henrique da Silveira, Marcelo Matos Santoro, Wagner Meira

“…Vast amounts of protein sequences and structures, protein and genetic interactions and phenotype studies have been produced. …”
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The Mediating Role of Depression and Pain Catastrophizing in the Relationship between Functional Capacity and Pain Intensity in Patients with Fibromyalgia by Casandra I. Montoro, Carmen M. Galvez-Sánchez

“…Method. 115 women diagnoses with FMS completed a set of self-administered questionnaires to evaluate the clinical and psychological variables of the study. …”
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Comparison of effectiveness of the addition of neuromuscular electrical stimulation of quadriceps muscle to standard rehabilitation protocol of ACL reconstruction by Anamika Lohiya, Himanshu Kataria, Himanshu Gupta, Diganta Bohra, Vineet Jain

“…Neuromuscular electrical stimulation (NMES) activates muscles in precise sequence and magnitude to directly accomplish functional tasks. …”
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Health risks and genetic architecture of objectively measured multidimensional sleep health by Shengkui Zhang, Manrui Zhang, Yuxin Yuan, Zilin Li, Xihao Li, Xiaoyu Li

“…However, limited studies have used objective measures to evaluate the co-occurrence of diverse unhealthy sleep characteristics and their pleiotropic health effects. …”
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Orchard: Building large cancer phylogenies using stochastic combinatorial search. by Ethan Kulman, Rui Kuang, Quaid Morris

“…Orchard optimizes each factor sequentially, generating a sequence of incrementally larger phylogenies that ultimately culminate in a complete tree containing all mutations. …”
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MRD: A Linear-Complexity Encoder for Real-Time Vehicle Detection by Kaijie Li, Xiaoci Huang

“…To address these limitations, this study introduces Mamba RT-DETR (MRD), an optimized architecture featuring three principal innovations: (1) We devise an efficient vehicle detection Mamba (EVDMamba) network that strategically integrates a linear-complexity state space model (SSM) to substantially mitigate computational overhead while preserving feature extraction efficacy. (2) To counteract the constrained receptive fields and suboptimal spatial localization associated with conventional SSM sequence modeling, we implement a multi-branch collaborative learning framework that synergistically optimizes channel dimension processing, thereby augmenting the model’s capacity to capture critical spatial dependencies. (3) Comprehensive evaluations on the BDD100K benchmark demonstrate that MRD architecture achieves a 3.1% enhancement in mean average precision (mAP) relative to state-of-the-art RT-DETR variants, while concurrently reducing parameter count by 55.7%—a dual optimization of accuracy and efficiency.…”
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The identification of cultural genes in historic districts and their influences on cultural perception—case study in Central Street in Harbin, China by Yang Ye, Tong Zhao, Xiaolei Shi, Pengyue Liu, Teng Fei

“…The impact of historical building interface ratio, Sense of historical architectural sequence, and hard landscape richness on cultural perception is relatively strong. …”
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Multi-featured spatial-temporal and dynamic multi-graph convolutional network for metro passenger flow prediction by Chuan Zhao, Xin Li, Zezhi Shao, HongJi Yang, Fei Wang

“…Temporal connections are learned from both the local and global information in a time-series sequence using the combination of a time-trend feature mapping block and a gated recurrent unit block. …”
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Acid Red 88 biodegradation by Cu nanoparticles stabilized on Marinospirillum alkaliphilum strain N by Samira Eshghi, Fereshteh Jookar Kashi

“…Strain Cu1, a copper-resistant strain from the Sungun copper mine, was used for biosynthesizing CuNPs, with 16S rDNA sequence analysis showing a 99.10% similarity to Micrococcus lylae. …”
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Improved salp swarm algorithm-driven deep CNN for brain tumor analysis by Umang Kumar Agrawal, Nibedan Panda, Ghanshyam G. Tejani, Seyed Jalaleddin Mousavirad

“…Hence, LS-SSA is an effective algorithm for hyperparameter tuning of CNNs evaluated on medical imaging datasets, specifically brain MRI. …”
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Linkage disequilibrium and genome-wide association mapping in tetraploid wheat (Triticum turgidum L.). by Giovanni Laidò, Daniela Marone, Maria A Russo, Salvatore A Colecchia, Anna M Mastrangelo, Pasquale De Vita, Roberto Papa

“…In addition, to validate the potential for association mapping in durum wheat, we evaluated the same genotypes for plant height, heading date, protein content, and thousand-kernel weight. …”
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Novel Genetic Variants of CDC25A Significantly Increase Risk of Spermatogenesis Arrest in Men from Bengali Population, India: A Cross-Sectional Study by Samudra Pal, Pranab Paladhi, Saurav Dutta, Ratna Chattopadhyay, Sujay Ghosh

“…Materials and Methods: The coding sequence of the entire CDC25A gene was sequenced in a population of azoospermic men. …”
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Benchmarking residue-resolution protein coarse-grained models for simulations of biomolecular condensates. by Alejandro Feito, Ignacio Sanchez-Burgos, Ignacio Tejero, Eduardo Sanz, Antonio Rey, Rosana Collepardo-Guevara, Andrés R Tejedor, Jorge R Espinosa

“…In this study, we systematically compare six state-of-the-art sequence-dependent residue-resolution models to evaluate their performance in reproducing the phase behaviour and material properties of condensates formed by seven variants of the low-complexity domain (LCD) of the hnRNPA1 protein (A1-LCD)-a protein implicated in the pathological liquid-to-solid transition of stress granules. …”
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A Heuristic Algorithm for Optimal Service Composition in Complex Manufacturing Networks by Yinan Wu, Gongzhuang Peng, Hongwei Wang, Heming Zhang

“…The proposed algorithm is evaluated through a set of computational experiments in which the proposed algorithm and other popular algorithms such as MFPB_HOSTP are applied to the same dataset, and the results obtained show that DHA_OSCP can efficiently find the optimal service composition path with better Quality of Service (QoS). …”
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Congenital factor V deficiency in a pediatric patient causing mild hemorrhage by Haiyue Zhang, Jun Wu

“…Background and Aims This study aimed to elucidate the phenotype and genotype of a patient (9-year-old) with coagulation factor V (FV) deficiency to enhance our understanding of this specific disorder.Methods FV activity and antigen level were evaluated using a clotting assay and ELISA, respectively. …”
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Study of ferromagnetic nanoparticles effect on tribotechnical lubricating characteristics by Elena Gennadyevna Zadoshenko, Victoria Eduardovna Burlakova

“…The preparation of lubricating compositions based on a number of sequence operations - ferromagnetic particles synthesis, their stabilization, and paste concentrate preparation - is described. …”
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