Pytrf: a python package for finding tandem repeats from genomic sequences by Lianming Du, Dalin Sun, Jiahao Chen, Xinyi Zhou, Kelei Zhao, Qianglin Zeng, Nan Yang

Get full text

Functional potential and applications of Ureibacillus massiliensis based on whole-genome sequencing analysis by Shiyao He, Qi Ding, Wenting Wu, Yun Zhang, Yan Kang, Yang Meng, Sirui Zhu, Jinyuan Wu

“…Result This study successfully isolated and identified a novel strain of U. massiliensis through whole-genome sequencing, constructing a complete genomic map of the species. …”
Get full text

ASSESSMENT OF CONSUMER IMPACT ON VOLTAGE ASYMMETRY BY THE ZERO SEQUENCE AT THE POINT OF COMMON CONNECTION by Dmitrii Kostyukov

“…It is shown that the evaluation of the consumers' impact on the voltage asymmetry by the zero sequence can be carried out by means of vector measurements of phase voltages and current of the neutral wire.…”
Get full text

An isotopic study of a late Quaternary loess-paleosol sequence in SW Germany by Konstantin Pustovoytov, Birgit Terhorst

Get full text

Genetic diversity of penicillin-resistant Streptococcus pneumoniae by T. A. Savinova, O. Y. Filimonova, S. A. Grudinina, S. V. Sidorenko

Get full text

Fast Type-II Hartley Transform Algorithms for Short-Length Input Sequences by Marina Polyakova, Aleksandr Cariow

“…This paper presents the type-II fast discrete Hartley transform (DHT-II) algorithms for input data sequences of lengths from 2 to 8. The starting point for developing the eight algorithms is the representation of DHT-II as a matrix–vector product. …”
Get full text

Evaluation of a biomarker for amyotrophic lateral sclerosis derived from a hypomethylated DNA signature of human motor neurons by Calum Harvey, Alicja Nowak, Sai Zhang, Tobias Moll, Annika K Weimer, Aina Mogas Barcons, Cleide Dos Santos Souza, Laura Ferraiuolo, Kevin Kenna, Noah Zaitlen, Christa Caggiano, Pamela J Shaw, Michael P Snyder, Jonathan Mill, Eilis Hannon, Johnathan Cooper-Knock

Get full text

Identification and Characterization of Microsatellites in Expressed Sequence Tags and Their Cross Transferability in Different Plants by Shamshad ul Haq, Rohit Jain, Meenakshi Sharma, Sumita Kachhwaha, S. L. Kothari

“…Expressed sequence tags (EST) are potential source for the development of genic microsatellite markers, gene discovery, comparative genomics, and other genomic studies. …”
Get full text

THE IMPORTANCE OF TARGETED NEXT-GENERATION SEQUENCING USAGE IN CYTOGENETICALLY NORMAL MYELOID MALIGNANCIES by Emine Atli, Rasime Kalkan, Cisem Mail, Damla Eker, Ufuk Demirci, Selma Demir, Sinem Yalcintepe, Hakki Onur Kirkizlar, Engin Atli, Hakan Gurkan, Ahmet Muzaffer Demir

Get full text

A Fused Multiscale Pictorial Sequence Learning Mechanism Applied to Pavement Detection by Zhang Jiazhen, Wang Xiulai, Zhao Shuxu

“…The static statistical evaluation value is retained as one of the specific data to assist in identifying the sample, and the two angle data complement each other to maximize the feature information entropy. …”
Get full text

Hybrid sequence learning with interpretability for multi-class quality prediction in injection molding by Varathorn Punyangarm, Supatchaya Chotayakul

Get full text

Transformer-Based Vulnerability Detection in IoT Firmware Binaries Using Opcode Sequences by M. Nandish, Jalesh Kumar, H. G. Mohan, M. V. Manoj Kumar

“…The model processes instruction opcode sequences and generates meaningful embeddings, which are utilized for classification tasks. …”
Get full text

Identification of pathogens causing fever in returning travelers using next-generation sequencing by Kenji Gotoh, Nobuyuki Hamada, Takahito Kashiwagi, Koyu Hara, Hiroshi Watanabe

“…Abstract Introduction In cases of fever following international travel, medical evaluation should consider the prevalence of infectious diseases in the travel destination. …”
Get full text

Targeted genotyping‐by‐sequencing of potato and data analysis with R/polyBreedR by Jeffrey B. Endelman, Moctar Kante, Hannele Lindqvist‐Kreuze, Andrzej Kilian, Laura M. Shannon, Maria V. Caraza‐Harter, Brieanne Vaillancourt, Kathrine Mailloux, John P. Hamilton, C. Robin Buell

“…Abstract Mid‐density targeted genotyping‐by‐sequencing (GBS) combines trait‐specific markers with thousands of genomic markers at an attractive price for linkage mapping and genomic selection. …”
Get full text

Single-cell RNA sequencing uncovers dynamic roadmap during chicken spermatogenesis by Haishan Guo, Jianing Liu, Mingzhen Xu, Tingqi Zhu, Shuangxing Liu, Pingquan Liu, Huayuan Liu, Shi Tang, Zhunan Li, Weiwei Jin, Donghua Li, Yadong Tian, Xiangtao Kang, Guirong Sun

Get full text

Machine learning reveals the dynamic importance of accessory sequences for Salmonella outbreak clustering by Chao Chun Liu, William W. L. Hsiao

“…To quantify the ability of MGE variations to cluster outbreak clones, we devised a reference-free tree-building algorithm inspired by colored de Bruijn graphs, which enabled topological comparisons between MGE and standard typing methods. Systematic evaluation of clustering MGEs on an unseen dataset of 34 Salmonella outbreaks yielded mixed results that exemplified the power of accessory sequence variations when core genomes of unrelated cases are insufficiently discriminatory, as well as the distortion of outbreak signals by microevolution events or the incomplete assembly of MGEs.IMPORTANCEGene-by-gene typing is widely used to detect clusters of foodborne illnesses that share a common origin. …”
Get full text

Identification of candidate cardiomyopathy modifier genes through genome sequencing and RNA profiling by Malene E. Lindholm, Sarah Abramowitz, Sarah Abramowitz, Daryl M. Waggott, Megan E. Grove, Frederick E. Dewey, Frederick E. Dewey, Cuiping Pan, Aleksandra Pavlovic, Ching Shang, Yong Huang, Leore Bensabath, Rachel L. Goldfeder, Pablo Cordero, Ayca Erbilgin, Ayca Erbilgin, James R. Priest, James R. Priest, Hassan Chaib, Megan J. Puckelwartz, Sharlene M. Day, Elizabeth M. McNally, Thomas Cappola, Gerald W. Dorn, Euan A. Ashley, Euan A. Ashley, Euan A. Ashley, Euan A. Ashley, Matthew T. Wheeler, Matthew T. Wheeler

“…The genome sequences were annotated with a custom pipeline optimized for cardiovascular gene variant detection. …”
Get full text

Whole genome mutagenicity evaluation using Hawk-Seq™ demonstrates high inter-laboratory reproducibility and concordance with the transgenic rodent gene mutation assay by Shoji Matsumura, Sayaka Hosoi, Takako Hirose, Yuki Otsubo, Kazutoshi Saito, Masaaki Miyazawa, Akihiro Kawade, Atsushi Hakura, Dai Kakiuchi, Shoji Asakura, Naoki Koyama, Yuki Okada, Satsuki Chikura, Takafumi Kimoto, Kenichi Masumura, Takayoshi Suzuki, Kei-ichi Sugiyama

“…Abstract Background Error-corrected next-generation sequencing (ecNGS) enables the sensitive detection of chemically induced mutations. …”
Get full text

Interobserver and sequence variability in the delineation of pelvic organs at risk on magnetic resonance images by Zheng Wanjia, Yang Xin, Cheng Zesen, Lian Jinxing, Li Enting, Mo Shaoling, Liu Yimei, Huang Sijuan

“…This study evaluates the contouring variability among observers using MR images reconstructed by different sequences and quantifies the differences of automatic segmentation models for different sequences.…”
Get full text

Metformin-Sensitized Chemotherapy of Docetaxel Nanoemulsions Based on a Sequential Administration by Junlei Zhang, Jiapeng Mao, Yilong Hu, Xingze Huang, Jian You, Lihua Luo

“…However, as a dynamic process, metabolic intervention requires a specific time sequence law to optimize its role. <b>Methods:</b> Different administration sequences were screened by in vitro experiments to determine the optimal sequence of metformin and docetaxel. …”
Get full text