A Bioinformatics-Based Approach for Designing Primer Sets in Determination of Meat Specificity by Omer Eren, İsmail Hakkı Parlak, Ercan Selçuk Ünlü, Mehmet Milli, Nursel Söylemez Milli

“…However, using those approaches requires intensive knowledge of computer science, molecular biology, and bioinformatics in addition to high computational power. …”
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Evaluating the Flexibility of Rural Public Cultural Spaces Based on Polyvalence Theory: A Case Study of Xiangyang Village, Shanghai by Chang Liu, Huiting Gan, Maoen He

“…Drawing on exemplary cases, this study proposes several key strategies such as (1) optimizing and innovatively activating residual spaces, (2) integrating multifunctional programs, and (3) improving spatial inclusiveness.…”
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Study on material point failure probability of complex jointed rock masses based on peridynamics by Yigong Zhao, Xiaoyan Zhang, Ze Li, Wushu Dong, Yakun Guo

“…This study proposes a peridynamics (PD) method based on Monte Carlo simulation analysis, discussing the impact of joints with different dips in complex joint networks on rock mass failure probabilities. Efficient parallel computing programs have been developed, markedly enhancing the computational efficiency of large-scale Monte Carlo simulations for PD analysis. …”
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Advanced Sales Route Optimization Through Enhanced Genetic Algorithms and Real-Time Navigation Systems by Wilmer Clemente Cunuhay Cuchipe, Johnny Bajaña Zajia, Byron Oviedo, Cristian Zambrano-Vega

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Joint representation and visualization of derailed cell states with Decipher by Achille Nazaret, Joy Linyue Fan, Vincent-Philippe Lavallée, Cassandra Burdziak, Andrew E. Cornish, Vaidotas Kiseliovas, Robert L. Bowman, Ignas Masilionis, Jaeyoung Chun, Shira E. Eisman, James Wang, Justin Hong, Lingting Shi, Ross L. Levine, Linas Mazutis, David Blei, Dana Pe’er, Elham Azizi

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Revealing the Role of X12Y12 Nanocages (X = B, In; Y = N, Sb) in NH3 Gas Adsorption: toward Gas Sensor Application by Erlan Fadhlan Hidayat, Silmi Rahma Amelia, Nita Dwi Fitriani, Issana Pramordha Wardhani, Rike Pradila, Alif Ijlal Wafi, Nadia Maharani Chadiza, Tety Sudiarti, Yuly Kusumawati, Fahdzi Muttaqien, Atthar Luqman Ivansyah

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Influence of Smartphones and Software on Acoustic Voice Measures. by Elizabeth U. Grillo, Jenna N. Brosious, Staci L. Sorrell, Supraja Anand

“…In addition, even though different algorithms are used to compute voice measures across software programs, some of the programs and measures share a similar relationship.…”
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Potential Mechanism of Immune Evasion Associated with the Master Regulator ASCL2 in Microsatellite Stability in Colorectal Cancer by Qian Yang, Guowei Huang, Liyan Li, Enmin Li, Liyan Xu

“…In this study, using computational programs, we identified 9 master transcription factors (TFs) based on epigenomic profiling in MSS CRC samples. …”
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deepBBQ: A Deep Learning Approach to the Protein Backbone Reconstruction by Justyna D. Kryś, Maksymilian Głowacki , Piotr Śmieja , Dominik Gront

“…Extensive comparison with similar programs shows that our solution is accurate and cost-efficient. …”
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Swarm-Based Trajectory Generation and Optimization for Stress-Aligned 3D Printing by Xavier Guidetti, Efe C. Balta, and John Lygeros

“…With this approach, the complex global trajectory generation problem is subdivided into a set of sequential and computationally efficient quadratic programs. Through comprehensive evaluations in both simulation and experiments, we compare our method to state-of-the-art approaches. …”
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New Perspectives on Reverse Translation: Brief History and Updates by Adhityo Wicaksono, Viol Dhea Kharisma, Arli Aditya Parikesit

“…On the other hand, current bioinformatic tools that rely on computational programs and biological databases represent a growing branch of biology. …”
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Joint Chance-Constrained Economic Dispatch Involving Joint Optimization of Frequency-Related Inverter Control and Regulation Reserve Allocation by Ye Tian, Zhengshuo Li, Wenchuan Wu, Miao Fan

“…Additionally, since the traditional sample average approximation (SAA) method imposes a huge computational burden, a novel mix-SAA (MSAA) method is proposed to transform the original intractable model into a linear model that can be efficiently solved via commercial solvers. …”
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Establecimiento de una colección de trabajo de uchuva del suroccidente colombiano Establishment of a Cape gooseberry working collection collected in the colombian southwest zone by Martha Liliana Bonilla Betancourt, Katherine Espinosa Piedrahíta, Andrés Mauricio Posso Terranova, Herney Darío Vásquez Amariles, Jaime Eduardo Muñoz Flórez

“…In addition its contributes to implement breeding programs.…”
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Virseqimprover: an integrated pipeline for viral contig error correction, extension, and annotation by Haoqiu Song, Saima Sultana Tithi, Connor Brown, Frank O. Aylward, Roderick Jensen, Liqing Zhang

“…The majority of viral contigs generated from de novo assembly programs are highly fragmented, presenting significant challenges to downstream analysis and inference. …”
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MRAS: Master Regulator Analysis of Alternative Splicing by Lei Zhou, Yue Huang, Yang Zhao, Dan Guo, Xiao Wen, Ruihong Xu, Xuan Lv, Song Wu, Sicheng Jing, Zhaoqi Liu

“…Here, MRAS (Master Regulator analysis of Alternative Splicing) is introduced, a computational method designed to pinpoint the pivotal splicing factors that play a central role in shaping splicing regulatory networks and influencing cellular processes. …”
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Fat-tail allele-specific expression genes may affect fat deposition in tail of sheep. by Hossein Mansourizadeh, Mohammad Reza Bakhtiarizadeh, Luciana Correia de Almeida Regitano, Jennifer Jessica Bruscadin

“…Hence, allelic imbalance of the fat deposition-related genes can be considered a novel layer of information for future research on genetic improvement and increased efficiency in sheep breeding programs.…”
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Differential Methylation of Genomic Regions Associated with Heteroblasty Detected by M&M Algorithm in the Nonmodel Species Eucalyptus globulus Labill. by Rodrigo Hasbún, Carolina Iturra, Soraya Bravo, Boris Rebolledo-Jaramillo, Luis Valledor

“…We used the M&M algorithm, a computational approach that integrates MeDIP-seq and MRE-seq data, to identify differentially methylated regions (DMRs). …”
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Rethinking the 'best method' paradigm: The effectiveness of hybrid and multidisciplinary approaches in chemoinformatics by José L. Medina-Franco, Johny R. Rodríguez-Pérez, Héctor F. Cortés-Hernández, Edgar López-López

“…In molecular modeling, a typical example is finding the best docking program. However, it is also known that each approach has its advantages and limitations. …”
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Modified methodology for determining the temperature profiles of inverted u-tubes steam generators used in pwr power plants by Marcos Filardy Curi, José Luiz Zanon Zotin, Luiz Carlos Chaves

“…The most common and reliable methodology for determining temperature profiles of Inverted U-tubes Steam Generators is using Computational Fluid Dynamics (CFD) programs. In this work, we developed a modified methodology, using the Wolfram Mathematica software, in order to determine, with good approximation, the temperature profiles of these kind of equipment. …”
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Object-topological modeling of electrical networks by I. A. Golovinskii

“…Examples of applying the object-topological approach and graph algebra to automating the solution of operational dispatch control problems are considered: tracing circuits on diagrams, interlocking switching operations, and managing the topology of the regime computational model. Their algorithms are expressed by graph algebra formulas that are convenient for programming.Conclusion. …”
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