Strategic priorities and challenges in research software funding: Results from an international survey [version 2; peer review: 2 approved, 1 approved with reservations, 1 not appr... by Daniel S. Katz, Eric A. Jensen

“…It spans a broad spectrum, including source code files, algorithms, scripts, computational workflows, and executables, all created for or during research. …”
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Transformer-based modeling of Clonal Selection and Expression Dynamics reveals resistance mechanisms in breast cancer by Nathan D Maulding, Jun Zou, Wei Zhou, Ciara Metcalfe, Joshua M Stuart, Xin Ye, Marc Hafner

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RESEARCH OF THE A380 AIRCRAFT VORTEX WAKE IMPACT ON MS-21 CLASS AIRCRAFT by A. I. Zhelannikov

“…To study the effect of the vortex wake from the preceding aircraft, a special computational software complex based on the discrete vortex method was developed. …”
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BESO Topology Optimization Driven by an ABAQUS-MATLAB Cooperative Framework with Engineering Applications by Dong Sun, Xudong Yang, Hui Liu, Hai Yang

“…Compared with conventional integration methods employing INP/FIL file interactions, the proposed framework reduces computational time through MATLAB’s advanced matrix operations while maintaining solution accuracy. …”
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Structural Damage Identification Using PID-Based Search Algorithm: A Control-Theory Inspired Application by Kuang Shi, Tingting Sun

“…Within the fixed number of iterations, PSA outperforms GA and PSO in computational efficiency. Although SA shows faster computation, it significantly compromises identification accuracy and fails in damage detection. …”
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Eisdspa: An Efficient and Secure Blockchain-Based Donation Scheme With Privacy Protection and Auditability by Yong Zhou, Hong Lei, Zijian Bao

“…Moreover, we assess the computational efficiency of Eisdspa, with experimental results indicating its high performance in computational overhead.…”
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Assessment of medical waste generation, disposal practices and health implications at Bule Hora University Teaching Hospital, West Guji, Ethiopia by Abaineh Kefale Gashaw, Sekhar Pitta, Leta Diro Jifera

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Topologically associating domains of chromatin on single-cell Hi-C data: a survey of bioinformatic tools and applications in the light of artificial intelligence by Hongqiang Lyu, Yao Li, Xinran Chen, Yuan Liu, Erhu Liu, Xiaoliang Cheng

“…Topologically associating domains (TADs) uncovered on bulk Hi-C data are regarded as fundamental building blocks of a three-dimensional genome, and they are believed to effectively participate in the regulatory programs of gene expression. The computational analysis of TADs on single-cell Hi-C (scHi-C) data in the era of single-cell transcriptomics has received continuous attention since it may provide information beyond that on bulk Hi-C data. …”
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Integrating Environmental Covariates into Adaptability and Stability Analyses: A Structural Equation Modeling Approach for Cotton Breeding by Matheus Massariol Suela, Moysés Nascimento, Ana Carolina Campana Nascimento, Camila Ferreira Azevedo, Paulo Eduardo Teodoro, Francisco José Correia Farias, Luiz Paulo de Carvalho, Diego Jarquin

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A single-cell atlas of spatial and temporal gene expression in the mouse cranial neural plate by Eric R Brooks, Andrew R Moorman, Bhaswati Bhattacharya, Ian S Prudhomme, Max Land, Heather L Alcorn, Roshan Sharma, Dana Pe'er, Jennifer A Zallen

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A Primer for Disease Gene Prioritization Using Next-Generation Sequencing Data by Shuoguo Wang, Jinchuan Xing

“…The recent development of many computational algorithms and programs has vastly improved the ability to translate sequence data into valuable information for disease gene identification. …”
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EFFECTIVE MODULI SIMULATION FOR VARIOUS TYPES OF POROUS PIEZOCERAMIC MATERIALS by Andrey Victorovich Nasedkin, Maria Sergeyevna Shevtsova

“…The calculations are performed using the specially developed computer programs in APDL ANSYS macro language. The effect of the cells number and various models of the representative volumes on the crucial values of the effective modules for a number of types of porous piezoelectric ceramics is investigated. …”
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The challenges and opportunities of women working in weaving cultural clothes at Bahir-Dar City, Bahirdar, Ethiopia by Tatek Getachew, Chekol Alemu, Habitamu Wudu

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A genome‐scale screen reveals context‐dependent ovarian cancer sensitivity to miRNA overexpression by Benjamin B Shields, Chad V Pecot, Hua Gao, Elizabeth McMillan, Malia Potts, Christa Nagel, Scott Purinton, Ying Wang, Cristina Ivan, Hyun Seok Kim, Robert J Borkowski, Shaheen Khan, Cristian Rodriguez‐Aguayo, Gabriel Lopez‐Berestein, Jayanthi Lea, Adi Gazdar, Keith A Baggerly, Anil K Sood, Michael A White

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Malicious-Secure Threshold Multi-Party Private Set Intersection for Anonymous Electronic Voting by Xiansong Qian, Lifei Wei, Jinjiao Zhang, Lei Zhang

“…This protocol is crucial for a variety of applications, such as anonymous electronic voting, online ride-sharing, and close-contact tracing programs. However, most existing TMP-PSI schemes are designed based on threshold homomorphic encryption, which faces significant challenges, including low computational efficiency and a high number of communication rounds. …”
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Robust Adaptive Beamforming Using a Low-Complexity Steering Vector Estimation and Covariance Matrix Reconstruction Algorithm by Pei Chen, Yongjun Zhao, Chengcheng Liu

“…A novel low-complexity robust adaptive beamforming (RAB) technique is proposed in order to overcome the major drawbacks from which the recent reported RAB algorithms suffer, mainly the high computational cost and the requirement for optimization programs. …”
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BFEX: A Toolbox for Finite Element Analysis With Fossils and Blender by E. Miguel Díaz de León‐Muñoz, Romain Boman, Gabriel S. Ferreira

“…ABSTRACT (1) Finite Element Analysis (FEA) has become a common method when studying fossils. As computer systems and tools advance, new software like Fossils is developed to make FE analyses more efficient. (2) However, the preparation of input data for analysis remains time‐consuming. …”
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Evaluating Whole Health Engagement Among Homeless-Experienced Veterans in an Emergency Shelter: A Quality Improvement Study by Tawny Saleh, MD, MS, Lillian Gelberg, MD, MSPH, FAAFP, Melissa Y. Chinchilla, PhD, MCP, MSHPM, Jennifer E. Allen, ANP-BC, MSN, Kristen L. Connor, MSPH, Lisa Altman, MD, Peter Capone-Newton, MD, PhD, MPH

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Increasing pathogenic germline variant diagnosis rates in precision medicine: current best practices and future opportunities by Sonam Dukda, Manoharan Kumar, Andrew Calcino, Ulf Schmitz, Matt A. Field

“…This review explores the latest technological and computational options being used to increase genetic diagnosis rates in precision medicine programs. …”
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NERVE 2.0: boosting the new enhanced reverse vaccinology environment via artificial intelligence and a user-friendly web interface by Andrea Conte, Nicola Gulmini, Francesco Costa, Matteo Cartura, Felix Bröhl, Francesco Patanè, Francesco Filippini

“…However, the problem-solving potential of most, if not all, RV programs is still largely unexploited by experimental vaccinologists that impaired by somehow difficult interfaces, requiring bioinformatic skills. …”
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