Whole-transcriptome sequencing reveals the effects of acupuncture on early embryos post-IVF-ET in poor ovarian response by Jianheng Hao, Yuemeng Zhao, Xuan Liu, Huichao Xu, Liying Liu, Haijun Wang, Ying Lan, Laixi Ji

“…Abstract Background Poor ovarian response (POR) refers to a pathological condition where the ovaries respond inadequately to gonadotropin stimulation during ovulation induction. …”
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New insights into the salt-responsive regulation in eelgrass at transcriptional and post-transcriptional levels by Huan Zhao, Huan Zhao, Xu Dong, Xu Dong, Dazuo Yang, Dazuo Yang, Qingchao Ge, Qingchao Ge, Peng Lu, Peng Lu, Chang Liu, Chang Liu

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Temporal dynamics of the multi-omic response reveals the modulation of macrophage subsets post-myocardial infarction by Yuan Wu, Panting Wei, Bin Li, Jiaqi He, Ting Zhou, Qingbin Hou, Yunhao Yu, Jingjin Hou, Chenghui Yan, Yaling Han

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Transcriptomic profiling reveals SARS-CoV-2-infected humanized MHC mice recapitulate human post vaccination immune responses by Siyue Li, Siyue Li, Xuelian Han, Ruolan Hu, Ruolan Hu, Keyu Sun, Min Li, Yuan Wang, Guangyu Zhao, Mengzhe Li, Huahao Fan, Huahao Fan, Huahao Fan, Huahao Fan, Qi Yin

“…MethodsThis study systematically characterized immune responses in SARS-CoV-2-challenged hMHC mice lung tissues through comparative transcriptomic profiling, combined with functional enrichment and PPI network analyses.ResultsKey findings demonstrate that hMHC mice exhibit enhanced immunological activation relative to wild-type controls, particularly in IFN-γ signaling pathways and neutrophil mobilization dynamics that closely parallel human post-vaccination responses. …”
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Progress in Transcriptomics and Metabolomics in Plant Responses to Abiotic Stresses by Tao Yu, Xuena Ma, Jianguo Zhang, Shiliang Cao, Wenyue Li, Gengbin Yang, Changan He

“…Over the past decade, advancements in high-throughput sequencing and mass spectrometry have propelled transcriptomics and metabolomics as pivotal post-genomic disciplines, offering unprecedented opportunities to dissect molecular mechanisms underlying stress responses. …”
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Genome-wide transcriptomic response of whole blood to radiation by Ahmed Salah, Daniel Wollschläger, Maurizio Callari, Heinz Schmidberger, Federico Marini, Sebastian Zahnreich

“…Abstract Blood cells are affected in nearly all ionizing radiation exposure scenarios. Whole transcriptome data offer detailed insights into blood’s radiation response, crucial for radiotherapy and biodosimetry. …”
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Unravelling the transcriptomic characteristics of bronchoalveolar lavage in post-covid pulmonary fibrosis by Mohammad Shadab Ali, Vijay Hadda, Sonia Verma, Anita Chopra, Saurabh Mittal, Karan Madan, Pawan Tiwari, Tejas Menon Suri, Anant Mohan

“…Abstract Background Post-Covid Pulmonary Fibrosis (PCPF) has emerged as a significant global issue associated with a poor quality of life and significant morbidity. …”
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Tissue-Specific Transcriptomic Responses to Avian Reovirus Inoculation in Ovo by Zubair Khalid, Shahna Fathima, Ruediger Hauck

“…Transcriptomic profiling revealed the intestines mounted an extensive gene expression response, implicating early immune activation. …”
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Transcriptomic and epigenetic responses shed light on soybean resistance to Phytophthora sansomeana by Gwonjin Lee, Charlotte N. DiBiase, Beibei Liu, Tong Li, Austin G. McCoy, Martin I. Chilvers, Lianjun Sun, Dechun Wang, Feng Lin, Meixia Zhao

“…In this study, we investigated transcriptomic and epigenetic responses of two resistant (Colfax and NE2701) and two susceptible (Williams 82 and Senaki) soybean lines at four time points (2, 4, 8, and 16 h post inoculation [hpi]) after P. sansomeana inoculation. …”
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Longitudinal transcriptomic and epigenetic analysis of the blood in two astronauts by Xiang Ao, Marc Parisien, Juan P. Cata, Francesca Montagna, Marie Vigouroux, Lorenna Oliveira Fernandes de Araujo, Mohamad Karaky, Pablo Ingelmo, Luda Diatchenko

“…Transcriptomic analysis identified two gene clusters with opposing transient expression trends post-flight (T2), normalized at T3: one upregulated and the other downregulated. …”
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Transcriptomic insights into early mechanisms underlying post-chikungunya chronic inflammatory joint disease by Mariana Severo Ramundo, Guilherme Cordenonsi da Fonseca, Felipe Ten-Caten, Alexandra L. Gerber, Ana Paula Guimarães, Erika Regina Manuli, Marina Farrel Côrtes, Geovana Maria Pereira, Otavio Brustolini, Milena Gomes Cabral, Carolina Dos Santos Lázari, Patrícia Brasil, Clarisse da Silveira Bressan, Helder I. Nakaya, Gláucia Paranhos-Baccalà, Ana Tereza R. Vasconcelos, Ester Cerdeira Sabino

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Transcriptome analysis of Aedes aegypti midgut and salivary gland post-Zika virus infection by Chunling Zhu, Yuting Jiang, Qianghui Zhang, Jian Gao, Chaojie Li, Chunxiao Li, Yande Dong, Dan Xing, Hengduan Zhang, Teng Zhao, Xiaoxia Guo, Tongyan Zhao

“…Our findings demonstrate that Ae. aegypti exhibit distinct transcriptomic changes in response to ZIKV infection. …”
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Transcriptome analysis reveals defense responses of alfalfa seedling roots to Sclerotium rolfsii by Shizhen Jia, Shizhen Jia, Zhencuo Dan, Zhencuo Dan, He Li, He Li, Yuhan Guo, Yuhan Guo, Lei Jia, Lei Jia, Ailing Yu, Ailing Yu, Huitong Zhan, Huitong Zhan, Xiangjun Liu, Xiangjun Liu, Teng Gao, Teng Gao, Yun Shi, Yun Shi, Zeng-Yu Wang, Zeng-Yu Wang, Lili Cong, Lili Cong, Lili Cong

“…After inoculating the plants with strain CZL1, root samples were collected at 24 hours post-inoculation (hpi) and 4 days post-inoculation (dpi) for transcriptome sequencing.ResultsA total of 11,433 and 12,063 differentially expressed genes (DEGs) were identified at CK (Control, non-inoculated) versus T24 h (24 hpi) and CK versus T4 d (4 dpi), respectively. …”
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Decoding hippocampal subfield and glial responses in ischemia using single-cell transcriptomics by Donghee Kwak, Ji Hyun Park, Yun Hak Kim, Hong Il Yoo

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The fat body transcriptomes of the yellow fever mosquito Aedes aegypti, pre- and post- blood meal. by David P Price, Vijayaraj Nagarajan, Alexander Churbanov, Peter Houde, Brook Milligan, Lisa L Drake, John E Gustafson, Immo A Hansen

“…As part of our ongoing efforts to understand mosquito fat body physiology and to identify novel targets for insect control, we have conducted a transcriptome analysis of the fat body of Aedes aegypti before and in response to blood feeding.…”
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Integrated analysis of microbiome and transcriptome reveals the mechanisms underlying the chlorogenic acid-mediated attenuation of oxidative stress and systemic inflammatory responses via gut-liver axis in post-peaking laying hens by Zhaoying Hu, Lianchi Wu, Yujie Lv, Chaoyue Ge, Xinyu Luo, Shenao Zhan, Weichen Huang, Xinyu Shen, Dongyou Yu, Bing Liu

“…Abstract Background Systemic inflammatory responses and oxidative stress occur in laying hens during the aging process, particularly during the post-peaking laying period, which generally result in multi-organ damages, leading to significant declines in egg performance and quality. …”
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Ulmus minor response to Dutch elm disease: de novo transcriptome assembly and annotation by V. Chano, J. Sobrino-Plata, C. Martínez-Arias, C. Collada, J. Rodríguez-Calcerrada, J. A. Martín

“…In this work, a de novo transcriptome assembly of Ulmus minor in response to ONU is presented. …”
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Characterizing changes in transcriptome and kinome responses in testicular cells during infection by Ebola virus by Andrew L. Webb, Brayden G. Schindell, Geoff Soule, Abu B. Siddik, Bernard Abrenica, Harram Memon, Ruey-Chyi Su, David Safronetz, Jason Kindrachuk

“…We used RNAseq analysis to characterize transcriptomic responses of Leydig cells and Sertoli cells to EBOV infection over time. …”
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Transcriptome‐To‐Phenome Response of Larval Eastern Oysters Under Multiple Drivers of Aragonite Undersaturation by Samuel J. Gurr, Shannon L. Meseck, Genevieve Bernatchez, Dylan Redman, Mark S. Dixon, Lisa Guy, Aaron MacDonald, Sheila Stiles, Katherine McFarland

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Transcriptome Analysis of Pepper Leaves in Response to Tomato Brown Rugose Fruit Virus Infection by Boshen Zhang, Donghai Wang, Mangle Chen, Jiali Yang, Junmin Li, Jianping Chen, Fei Yan, Shaofei Rao

“…Our systematic analysis provides a molecular basis for the response of chili pepper leaves to ToBRFV infection at the transcriptomic level and offers potential candidate genes for further research into the interaction mechanisms between ToBRFV and plant hosts.…”
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