Early Transcriptional Changes in Feline Herpesvirus-1-Infected Crandell-Rees Feline Kidney Cells by Xiuqing Xiao, Fuqiang Xu, Fan Jia

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Time-Series Transcriptome Analysis of the European Plum Response to Pathogen <i>Monilinia fructigena</i> by Raminta Antanynienė, Monika Kurgonaitė, Ingrida Mažeikienė, Birutė Frercks

“…Victoria, inoculated with the <i>M. fructigena</i> pathogen at 24, 48, and 72 h post inoculation. By transcriptome sequencing, the number of differentially expressed genes (DEGs) increased over time, with the highest number at 72 hpi, showing the tendency to involve more genes in the response to prolonged exposure to the pathogen. …”
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Host Immune Response to Clinical Hypervirulent Klebsiella pneumoniae Pulmonary Infections via Transcriptome Analysis by Langhuan Lei, Xiaoli Zhang, Rui Yang, Haiming Jing, Yue Yuan, Zhifu Chen, Qiang Gou, Zhuo Zhao, Jinyong Zhang, Xingyong Wang

“…Transcriptome data were analyzed with KEGG, GO, and ICEPOP. …”
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Whole transcriptome analysis of breast tumors during neoadjuvant chemotherapy: association with response to preoperative chemotherapy by M. K. Ibragimova, M. M. Tsyganov, N. V. Litviakov

“…Therefore, the search for new genetic predictors of tumor response to preoperative treatment, as well as the assessment of tumor changes during neoadjuvant chemotherapy are highly relevant.Objective – to perform whole-transcriptome analysis of breast cancer during neoadjuvant chemotherapy depending on tumor response to preoperative treatment.Materials and methods. …”
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Transcriptomic Profiling Reveals the Involvement of the Phenylpropanoid–Lignin Pathway in the Response of Maize Roots to Zinc Stress by Ying Zhou, Tianyu Gu, Yan Gao, Jingtao Qu, Hongjian Zheng, Yuan Guan, Jiashi Peng

“…In this study, seedlings of maize inbred line B73 were exposed to excessive Zn treatment, and transcriptomic profiling of the roots was conducted at 0, 2, 6, 12, 24, and 48 h post-treatment. …”
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Integrated analysis of transcriptome, sRNAome, and degradome involved in the drought-response of maize Zhengdan958 by Yang Shuqiong, Liu Jiafei, Cao Lingling, Chen Jibao, Duan Pengfei

“…As a significant epigenetic regulator, small RNA also functions in connecting the transcriptional and post-transcriptional regulatory network. Further to help comprehending the molecular mechanisms underlying drought adaptability and tolerance of maize, an integrated multi-omics analysis of transcriptome, sRNAome, and degradome was performed on the seedling roots of an elite hybrid Zhengdan958 under drought stress. …”
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The dynamic transcriptome reveals response patterns to black shank disease in tobacco (Nicotiana tabacum L.) by Zhijun Tong, Zuoqian Fan, Tianyu Du, Dunhuang Fang, Xueyi Sui, Chuyu Ye, Qian-Hao Zhu, Longjiang Fan, Bingguang Xiao, Enhui Shen

“…Our findings provide invaluable insights into the dynamic transcriptome in defense responses of tobacco against P. nicotianae infection.…”
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Dynamic transcriptomic responses to soybean cyst nematode infection in soybean genotypes with contrasting resistance profiles by Nour Nissan, Nour Nissan, Nathalie Puchacz, Julia C. Hooker, Julia C. Hooker, Dave T. Ste-Croix, Gerardo Zapata, François Lefebvre, Martin Charette, Ashkan Golshani, Elroy Cober, Benjamin Mimee, Bahram Samanfar, Bahram Samanfar

“…Control and infected root tissues were collected at 5 and 10 day post-infection for RNA sequencing and comparative transcriptomic response analyses were performed.Results and discussionThe resistance mechanism employed by PI 561310 appears to be driven by the expression of PAL, which positively regulates downstream lignin, flavonoid and salicylic acid biosynthesis pathways. …”
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Temporal changes in the transcriptome profile of Macrobrachium rosenbergii in response to decapod iridescent virus 1 infection by Jingwen Hao, Jingwen Hao, Yukun Jie, Yukun Jie, Zhibin Lu, Zhibin Lu, Tiantian Ye, Jilun Meng, Cui Liu, Junjun Yan, Yutong Zheng, Zaijie Dong, Zhimin Gu

“…To gain deeper insights into the dynamic immune regulatory processes of M. rosenbergii in response to DIV1 infection, RNA sequencing (RNA-seq) was employed to profile the transcriptome in the hepatopancreas at 24, 48, 72, and 96 hours post-infection (hpi). …”
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A transcriptomic survey of the impact of environmental stress on response to dengue virus in the mosquito, Aedes aegypti. by David S Kang, Martin S Barron, Diane D Lovin, Joanne M Cunningham, Matthew W Eng, Dave D Chadee, Jun Li, David W Severson

“…Here, we present the first whole transcriptome study to address the impact of environmental stress on A. aegypti response to dengue virus. …”
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Single‐Cell Transcriptomes of Immune Cells from Multiple Compartments Redefine the Ontology of Myeloid Subtypes Post‐Stroke by Mo Yang, Yixiang Li, Kaibin Shi, Xuezhu Wang, Xiangrong Liu, Xiang Huang, Fu‐Dong Shi, Shaojie Ma, Mingfeng Li, Yilong Wang

“…Together, a comprehensive molecular survey of post‐stroke immune responses is performed, encompassing both local and distant bone marrow sites and peripheral blood.…”
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Integrated metabolomic and transcriptomic analysis highlight the flavonoid response to antioxidant activity and Aspergillus flavus resistance in peanut seed coats by Xuejie Zhao, Minghui Xing, LiJing Zhang, Suoyi Han, Xinyou Zhang, Jinyong Huang

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Comprehensive transcriptome assessment in PBMCs of post-COVID patients at a median follow-up of 28 months after a mild COVID infection reveals upregulation of JAK/STAT signaling and a prolonged immune response by Serena Fineschi, Serena Fineschi, Joakim Klar, Juan Ramon Lopez Egido, Jens Schuster, Jonas Bergquist, Jonas Bergquist, René Kaden, René Kaden, Niklas Dahl

“…Sixty-seven participants performed a mild exertion ergometer test with assessment of lactate concentrations. Transcriptome analysis was performed on mRNA selected by poly-A enrichment and SARS-CoV-2 RNA fragments were analyzed using the ARTIC protocol.ResultsWe identified 463 differentially expressed transcripts in PBMCs, of which 324 were upregulated and 129 downregulated in post-COVID patients. …”
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Comprehensive RNA-Seq profiling of the lung transcriptome of Bashbay sheep in response to experimental Mycoplasma ovipneumoniae infection. by Zhihui Du, Yanming Sun, Jixue Wang, Haiyan Liu, Yi Yang, Ning Zhao

“…We found 1048 differentially expressed genes (575 up-regulated, 473 down-regulated) when comparing transcriptomic data at 4 and 0 days post-infection, and 2823 (1362 up-regulated, 1461 down-regulated) when comparing 14 versus 0 days post-infection. …”
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Transcriptomic and proteomic analysis reveals the mechanism of chicken cecum response to Salmonella enterica serovar Enteritidis inoculation by Yuanmei Wang, Liying Liu, Yanan Zhao, Yanru Ren, Xiuxiu Miao, Yaning Dong, Lewen Liu, Xianyao Li

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Single-Nucleus and Spatial Transcriptomics Revealing Host Response Differences Triggered by Mutated Virus in Severe Dengue by Qian Chen, Yizhen Yuan, Fangzhou Cai, Zhe Li, Qiang Wei, Wei Wang

“…This evolutionary variant results in high replicability, severe pathogenicity, and strong responses in murine. Moreover, the host responses may play a role by activating the NRG/ErbB signaling pathway. …”
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Transcriptome and Small-RNA Sequencing Reveals the Response Mechanism of <i>Brassica napus</i> to Waterlogging Stress by Xianshuai Song, Lan Ge, Kaifeng Wang, Nian Wang, Xinfa Wang

“…Rapeseed (<i>Brassica napus</i>) is highly susceptible to waterlogging during the seedling stage; however, most of the studies on its gene expression under waterlogging stress have focused on transcriptional regulation, with little work conducted on post-transcriptional regulation to date. To elucidate this regulatory network, comparative transcriptome and miRNA analyses in the leaves and roots of rapeseed Zhongshuang11 (ZS11) were performed. …”
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Transcriptomic and Proteomic Profiling of Rabbit Kidney Cells Infected with Equine Herpesvirus 8 by Yanfei Ji, Dandan Xu, Wenxuan Si, Yu Zhang, Muhammad Zahoor Khan, Xia Zhao, Wenqiang Liu

“…The present study investigated the host cell response to EHV-8 infection in rabbit kidney (RK-13) cells through transcriptomic and proteomic approaches. …”
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Transcriptomic analysis reveals molecular phenological changes during the flower-to-fruit transition in Vanilla planifolia Andrews (Orchidaceae) by Olga Andrea Hernández-Miranda, Jorge E. Campos, Estela Sandoval-Zapotitla, Ulises Rosas, María Teresa Ortiz-Melo, Victor Manuel Salazar-Rojas

“…Conclusions This study characterizes the molecular and phenological changes occurring during the flower-to-fruit transition in V. planifolia by integrating transcriptomic analysis with anatomical data on post-pollination syndrome. …”
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Temporal dynamics of chicken host’s molecular response against Fowl adenovirus serotype 8b infection via RNA-sequencing by Bahiyah Azli, Nur Farhana Salim, Mohd Hair-Bejo, Abdul Rahman Omar, Norfitriah Mohamed Sohaimi, Ugwu Chidozie Clifford, Nor Asilah Wati Abdul Hamid, Nurulfiza Mat Isa

“…Results The harvested chicken livers were subjected to biological pooling and transcriptomic profiling via RNA-sequencing, according to the days of post-infections (dpi). …”
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