Comprehensive analysis of lysine lactylation and its potential biological significance in clear cell renal cell carcinoma by Bangbei Wan, Yuan Huang, Binghao Gong, Yaohui Zeng, Cai Lv

“…Gene ontology (GO), Kyoto Encyclopedia of Genes and Genomes (KEGG), and protein–protein interaction (PPI) network analyses were conducted to clarify the biological functions and interactional relationships of differentially lactylated proteins (DLPs). …”
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A Privacy-Masking Learning Algorithm for Online Distributed Optimization over Time-Varying Unbalanced Digraphs by Rong Hu, Binru Zhang

“…This paper investigates a constrained distributed optimization problem enabled by differential privacy where the underlying network is time-changing with unbalanced digraphs. …”
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Transcriptome analysis of early pregnancy vitamin D status and spontaneous preterm birth. by Aishwarya P Yadama, Hooman Mirzakhani, Thomas F McElrath, Augusto A Litonjua, Scott T Weiss

“…Of these genes, 43 (25 upregulated) were replicated in the independent cohort of sPTB cases and controls with normal pregnancies (P < 0.05). Functional enrichment and network analyses of the replicated gene signatures suggested several highly connected nodes related to inflammatory and immune responses.…”
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Meanings of family under the perspective of parents of adolescent students by Francisca Georgina Macedo de Sousa, Leda Barros de Castro, Ana Larissa Araujo Nogueria, Italo Rodolfo Silva, Dennyse Cristina Macedo da Silva, Nayra Michele Anjos Amorim

“…Eight themes emerged: Structure, values and meanings of family; Roles and functions of family members; Family and school; Family dynamics and the health-disease process in the family; Affective bonds and family relationships; Strategies for family functioning; Feelings and support network; Adolescence and the adolescent in the family. …”
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Bioinformatics analysis and experimental validation of ferroptosis genes in heart failure and atrial fibrillation by Zhi Wang, Chi Yuan, Tao Xu, Weixing Xie, Jiehua Wu, Hegui Wang

“…By integrating these datasets with the known ferroptosis-related genes (FRGs) from GeneCards and PubMed, we identified ferroptosis-related differentially expressed genes (FRDEGs). Functional enrichment and the construction of the PPI network for key genes were conducted. …”
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INNOVATION ECOSYSTEM MODELS: DEFINING THE ROLE OF THE UNIVERSITY IN THE INDUSTRY 5.0 PERSPECTIVE by Olga VOROPAI, Oleksandra ANTONIOUK

“…This paper contributes to the theoretical foundations of the ecosystem functioning by arguing for the necessity to combine a linear approach for the structured innovation development progression, a helix model – for stakeholder engagement and a network model – and for dynamic interconnectivity. …”
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Optimal allocation of STATCOM for multi-objective ORPD problem on thermal wind solar hydro scheduling using driving training based optimization by Tushnik Sarkar, Sabyasachi Gupta, Chandan Paul, Susanta Dutta, Provas Kumar Roy, Anagha Bhattacharya, Ghanshyam G. Tejani, Seyed Jalaleddin Mousavirad

“…Abstract On IEEE 30, 57, 118 & 300-bus experimental networks, this work aims to solve the optimal reactive power dispatch (ORPD) problem. …”
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Arbuscular Mycorrhizal Fungi Can Improve the Water Use and Phosphorus Acquisition Efficiencies of Aerobically Grown Rice by Stephanie J. Watts‐Williams, Alison R. Gill, Thi Diem Nguyen, Ehsan Tavakkoli, Nathaniel Jewell, Chris Brien

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Estimating ocean currents from the joint reconstruction of absolute dynamic topography and sea surface temperature through deep learning algorithms by D. Ciani, C. Fanelli, B. Buongiorno Nardelli

“…This modification allows us to evaluate the potential enhancement in the ADT and SST mapping while integrating dynamical constraints through tailored, physics-informed loss functions. The neural networks are thus trained using OSSE data and subsequently applied to the Copernicus Marine Service satellite-derived ADTs and SSTs, allowing us to reconstruct super-resolved ADTs and geostrophic currents at the same spatiotemporal resolution of the model outputs employed for the OSSE. …”
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Transcriptomics Revealed Differentially Expressed Transcription Factors and MicroRNAs in Human Diabetic Foot Ulcers by Vikrant Rai

“…For this study, RNA sequencing was conducted on 20 DFU samples of ulcer tissue and non-ulcerated nearby healthy tissues. …”
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Comprehensive analysis of the multifaceted role of ITGAV in digestive system cancer progression and immune infiltration by Xinyue Shi, Jingyu Zang, Qi Gu, Mengmeng Zhang, Handi Sun, Lijun Yang, Jiahui Cheng, Ruonan Wang, Han Mao, Aitong Xu, Xin Wang, Yu Xiao, Jialing Cai, Fang Han, Depeng Yang, Yu Li, Huan Nie

“…In addition, GO, KEGG, and PPI network analysis revealed the biological functions and related signaling pathways related to ITGAV. …”
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Key Connectomes and Synaptic‐Compartment‐Specific Risk Genes Drive Pathological α‐Synuclein Spreading by Yuanxi Li, Justin Torok, Shujing Zhang, Jessica Ding, Ning Wang, Courtney Lau, Shruti Kulkarni, Chaitali Anand, Julie Tran, Michael Cheng, Claire Lo, Binbin Lu, Yanzi Sun, Robert Damoiseaux, Xia Yang, Ashish Raj, Chao Peng

“…Those risk genes are significantly enriched in microglial cells of presynaptic regions and neurons of postsynaptic regions. Gene regulatory network analyses are then conducted to identify “key drivers” of genes responsible for selective vulnerability and overlapping with Parkinson's disease risk genes. …”
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Rough-and-Refine Model for Scene Graph Generation by Li Junliang, Lv Shirong, Li Wei

“…Predictions for the different paths of the triplet are independently executed using feedforward neural networks. Each feedforward neural network consists of two perceptrons with ReLU activation functions and a linear projection layer, facilitating both category classification and bounding box regression.Results and DiscussionsTo evaluate the performance of RRM in the scene graph generation task, we employed several commonly used metrics in this research domain: Recall@K (R@K) and Mean Recall@K (mR@K). …”
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Genome-wide identification and integrated analysis of the WNK kinase gene family and expression analysis of PgWNK genes under methyl jasmonate treatment in Panax ginseng by Kexin Zhang, Aimin Wang, Lin Shi, Jiaqing Liu, Yu Zhang, Yang Jiang, Meiping Zhang, Yi Wang, Mingzhu Zhao, Kangyu Wang

“…However, there are no reports on the effects of WNK in ginseng under methyl jasmonate (MeJA) treatment. In this study, we conducted a detailed screening, identification, and systematic research on the WNK gene family in ginseng, including phylogenetic relationships, gene structure, chromosomal distribution, GO functional classification, cis-regulatory elements, co-expression network analysis, and gene expression pattern analysis. …”
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Evaluation of meningitis surveillance system in rural area, Rwanda by Solange Nyinawabeza, Jean Claude Niyoyita, Emmanuel Nshimiyimana, Jerome Ndayisenga, Angela Umutoni, Caroline Stamatakis

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Tissue-Based Metabolomic Profiling of Endometrial Cancer and Hyperplasia by Khalid Akkour, Afshan Masood, Maha Al Mogren, Reem H. AlMalki, Assim A. Alfadda, Salini Scaria Joy, Ali Bassi, Hani Alhalal, Maria Arafah, Othman Mahmoud Othman, Hadeel Mohammad Awwad, Anas M. Abdel Rahman, Hicham Benabdelkamel

“…ROC analysis was carried out, followed by network analysis using Ingenuity Pathway Analysis. …”
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Professionnalisation des métiers de l’enseignement : l’apport de l’observation des pratiques by Joël Clanet

“…This article addresses the contributions to our knowledge of teaching practices in context made by several studies, many of which were conducted by teams affiliated with the OPEN (Observation des Pratiques Enseignantes) network. …”
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Innovative Tools of Educational Organization Development Management: Benchmarking by E. O. Okunkova

“…The study found that benchmarking is the most appropriate way to improve the work of the educational organization, which is a process of constantly measuring and comparing the methods and results of the work of the organization, its individual divisions, functions, processes with organizations chosen for imitation. …”
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Vascularised organoids: Recent advances and applications in cancer research by Rui Zhou, Dagmar Brislinger, Julia Fuchs, Alicia Lyons, Sonja Langthaler, Charlotte A. E. Hauser, Christian Baumgartner

“…Abstract Organoids are three‐dimensional (3D) cellular models designed to replicate human tissues and organs while preserving their physiological complexity and functionality. Among these, vascularised organoids represent a groundbreaking advancement in 3D tissue engineering, incorporating vascular networks into engineered tissues to more accurately mimic the in vivo tumour microenvironment. …”
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Comparative transcriptome analysis reveals key genes and signaling pathways mediated by salicylic acid in potato by Aie Chen, Beini Zhang, Huijie Wang, Jiangqing Wang, Ji Wei, Yuxin Jia, Hongyang Wang

“…Objective This study aims to elucidate the SA-mediated transcriptional network in potato by conducting a comparative transcriptomic analysis under treatments with exogenous SA and 1-aminobenzotriazole (ABT), a pan-selective cytochrome P450 inhibitor, that impairs enzymes required for salicylic acid (SA) biosynthesis. …”
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