Organic Acids Metabolic Response and Transcription Factor Expression Changes of Highland Barley Seedlings Under Na₂SeO₃ Treatment by Xiaozhuo Wu, Huichun Xie, Jianxia Ma, Guigong Geng, Xiaoli Yang, Feng Qiao

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Host plant driven transcriptome plasticity in the salivary glands of the cabbage looper (Trichoplusia ni). by Loren J Rivera-Vega, David A Galbraith, Christina M Grozinger, Gary W Felton

“…Overall, this study demonstrates that the transcriptomes of the salivary glands of the cabbage looper are strongly responsive to diet. …”
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Combined Transcriptomic and Mendelian Randomisation Explores the Diagnostic Value of Ubiquitination-Related Genes in Sepsis by Bai X, Liu R, Tang Y, Yang L, Niu Z, Hu Y, Zhang L, Chen M

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PM2.5 Induces Cell-Specific Transcriptomic Alterations in the Lungs of Juvenile Mice by Gui B, Li Y, Li K, Wang J, Fan W, Li L, Wu Q, Chen H

“…PM2.5 exposure also reshaped cell-cell communication networks, particularly involving alveolar macrophages and immune cells.Conclusion: These findings reveal cell-type-specific transcriptomic responses to PM2.5 in juvenile lungs, emphasizing its potential to disrupt immune homeostasis and contribute to pulmonary disease development in children.Keywords: air pollution, children, macrophages, dendritic cells, lung inflammation…”
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‘QuickDASH’ to find unique genes and biological processes associated with shoulder osteoarthritis: a prospective case–control study by Samuel J. Lynskey, Stephen D. Gill, Sean L. McGee, Mark Ziemann, Richard S. Page

“…Results The analysis revealed that genes most strongly associated with increasing QuickDASH scores across tissues were linked to inflammation and stress response. …”
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Integrated metagenomics and transcriptomics analysis reveals pathways associated with oral periapical lesions formation and progression by Alaa Muayad Altaie, Thenmozhi Venkatachalam, Kiran Patil, Farah Al-Marzooq, Surendra Singh Rawat, Ali Al Qabbani, Mohammed Amjed Alsaegh, Lakshman P. Samaranayake, Sameh S.M. Soliman, Rifat Hamoudi

“…Periapical abscesses, radicular cysts, and periapical granulomas are among the most frequently identified pathological lesions in the alveolar bone. …”
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Transcriptome Insights into Resistance Mechanisms Against Soybean Mosaic Virus Strain SC4 in Soybean by Muhammad Muzzafar Raza, Huiying Jia, Shengyu Gu, Junyi Gai, Kai Li

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Elucidating the Mechanism of Temporal Adaptation to Hydrogen Peroxide‐Induced Oxidative Stress in Corynebacterium glutamicum by Chang Yu, Wenjing Hu, Xiaoyu Li, Yu Lei, Dandan Gao, Meng Wang, Ping Zheng, Yan Zhu, Jibin Sun

“…However, the intricate mechanisms underlying the dynamic defence of C. glutamicum, despite previous transcriptomic studies on acute and adaptive responses to oxidative stresses, remain largely unclear, hindering strain engineering for industrial applications and the development of effective antimicrobial treatments. …”
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Decoding pilocarpine biosynthesis and its roles in Pilocarpus microphyllus through a comparative transcriptomics approach by Mariane Brom Sobreiro, Giordano Bruno Soares-Souza, Leandro Magalhães, Débora de Morais Cordeiro, Michele Molina, Santelmo Vasconcelos, Yan Nunes Dias, Renato R. Moreira-Oliveira, Markus Gastauer, Silvio Ramos, Guilherme Oliveira, Cecílio Frois Caldeira, Amanda F. Vidal

“…We observed that the root exhibited the most diverse functional profile, including an abundance of TFs involved in alkaloid biosynthesis. …”
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Single‐Cell Transcriptome Reveals Aquaporin‐Mediated Carbon Nanosol‐Induced Growth Promotion of Plants by Lingtong Cheng, Zechao Qu, Qiansi Chen, Lin Wang, Huan Su, Jiemeng Tao, Peng Lu, Taibo Liang, Jianfeng Zhang, Peijian Cao, Jingjing Jin

“…CNS is found to affect gene expression in a cell type‐specific manner, suggesting the heterogeneity of plant response to CNS. Further pseudo‐time trajectory analysis reveals that most cell types undergo cell fate transitions toward a more mature state under CNS treatment. …”
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Physiological and transcriptomic evidence revealed the role of exogenous GABA in enhancing salt tolerance in strawberry seedlings by Yunting Zhang, Meiyi Deng, Bangyu Lin, Su Tian, Yan Chen, Shan Huang, Yuanxiu Lin, Mengyao Li, Wen He, Yan Wang, Yong Zhang, Qing Chen, Ya Luo, Xiaorong Wang, Xianjie Gu, Haoru Tang

“…Abstract As one of the most salt-sensitive crops, strawberry production is severely limited by salt stress. γ--aminobutyric acid (GABA) has been reported to play an important role in the immune response of plants. …”
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Transcriptome profiling reveals key genes in eggplant (Solanum melongena) roots under salt stress by Hongmei Sun, Yong Wang, Lianbin Cao, Yihan Wang, Zhaoyang Wei, Li Song, Jun Jiang, Junhe Liu, Shilin Tian

“…In this study, salt stress markedly elevated the Na+ ion concentration, reactive oxygen species (ROS), proline, and malondialdehyde (MDA) content, in addition to enhancing the activities of superoxide dismutase (SOD) and peroxidase (POD) in the roots of the eggplant inbred ZH171. Transcriptome analysis revealed a total of 3491 DEGs in eggplant roots response to salt stress. …”
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Identification and analysis of bHLH transcription factor family in red raspberry based on transcriptome sequencing by HE Zhimin1,2, ZHANG Junxin1,2, YU Liping1,2, HU Kang1,2, JI Fengqi1,2, HUANG Tiran1,2, YANG Mingfeng1,2*, MA Lanqing1,2

“…bHLH transcription factors are a large family of transcription factors in plants, which play important roles in plant growth and development, secondary metabolism regulation, and hormone response. Red raspberry fruit is rich in raspberry ketone. …”
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Transcriptomic profiling of blood from autoimmune hepatitis patients reveals potential mechanisms with implications for management. by Michele May-Sien Tana, Arielle Klepper, Amy Lyden, Angela Oliveira Pisco, Maira Phelps, Breann McGee, Kelsey Green, Sandy Feng, Joseph DeRisi, Emily Dawn Crawford, Craig S Lammert

“…Autoimmune hepatitis (AIH) is a poorly understood, chronic disease, for which corticosteroids are still the mainstay of therapy and most patients undergo liver biopsy to obtain a diagnosis. …”
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Dynamic transcriptome and metabolome analyses of two sweet corn lines under artificial aging treatment by Zili Zhang, Ruichun Yang, Lei Gao, Shilin Huang, Feng Jiang, Qingchun Chen, Pengfei Liu, Faqiang Feng

“…Fourteen common transcripts and 16 common metabolites with sustained differential expression were identified in the two lines, suggesting their potential necessity in seed response to artificial aging. Enrichment analysis of differentially expressed genes (DEGs) in the transcriptome at different stages revealed significant enrichment KEGG pathways, “Oxidative phosphorylation” was the common pathway in the 0d vs 3d comparison for K107 and L155. …”
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Phenotypic, transcriptomic and metabolomic changes in Klebsiella pneumoniae after long term exposure to simulated microgravity by Xia Wang, Zili Chai, Wenting Liu, Tianye Jia, Zilong Yang, Fengwei Zhang, Fuqiang Kang, Qiming Wang, Xianwei Ye, Hongguang Ren, Xiaodong Zai, Junjie Yue, Yuan Jin

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The fat body transcriptomes of the yellow fever mosquito Aedes aegypti, pre- and post- blood meal. by David P Price, Vijayaraj Nagarajan, Alexander Churbanov, Peter Houde, Brook Milligan, Lisa L Drake, John E Gustafson, Immo A Hansen

“…As part of our ongoing efforts to understand mosquito fat body physiology and to identify novel targets for insect control, we have conducted a transcriptome analysis of the fat body of Aedes aegypti before and in response to blood feeding.…”
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Integrated transcriptomic and metabolomic analyses provide new insights into alkaline stress tolerance in Gossypium hirsutum by Shiwei Geng, Wenju Gao, Fenglei Sun, Ni Yang, Teng Ma, Tingwei Wang, Bingyue Wang, Junhao Wang, Shuaishuai Qian, Shengmei Li, Jieyin Zhao

“…IntroductionCotton, one of the most important economic crops worldwide, has long been bred mainly for improvements in yield and quality, with relatively little focus on salt–alkali resistance.MethodsIn this study, transcriptomic and metabolomic sequencing were performed on Gossypium hirsutum exposed to alkaline stress for different durations.ResultsThe results of sample clustering, principal component analysis (PCA), and the number of differentially expressed genes (DEGs) revealed that 12 hours and 24 hours were the periods during which upland cotton presented the strongest response to salt stress, with flavonoid biosynthesis and alpha-linolenic acid metabolism playing significant roles during this time. …”
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The Effect of Oral Care Product Ingredients on Oral Pathogenic Bacteria Transcriptomics Through RNA-Seq by Ping Hu, Sancai Xie, Baochen Shi, Cheryl S. Tansky, Benjamin Circello, Paul A. Sagel, Eva Schneiderman, Aaron R. Biesbrock

“…Stannous fluoride, stannous chloride, and cetylpyridinium chloride showed the most robust efficacy in inhibiting the growth or gene expression of various bacteria and pathogenic pathways. …”
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Transcriptomic Analyses Reveal Light-Induced Anthocyanin Accumulation in <i>Lycium ruthenicum</i> Murray by Shengrong Chen, Tao He, Wenyi Gu, Ruimin Li, Yinyan Qi

“…Key regulatory genes like GRAS, HD-ZIP, MADS, and mTERF were involved in anthocyanin accumulation in response to light. A proposed model has been developed to elucidate the mechanism by which light controls the biosynthesis of anthocyanin, providing insights into light signal regulation. …”
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