A dataset of transcriptomic effects of camptothecin treatment on early zebrafish embryosGene Expression Omnibus by Sergey V. Prykhozhij, Kevin Ban, Zane L. Brown, Kim Kobar, Gabriel Wajnberg, Charlotte Fuller, Simi Chacko, Jacynthe Lacroix, Nicolas Crapoulet, Craig Midgen, Adam Shlien, David Malkin, Jason N. Berman

“…Enriched terms and pathways among up-regulated genes were mostly related to stress, cell death, cell cycle regulation, transcriptional regulation, cell signalling, developmental processes and synthesis of retinol and steroid hormones. …”
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Changes of endogenous hormone concentrations and transcriptome analysis during the healing process of greenwood grafting in grape by DENG Jiayi, WEI Jiayan, CHEN Aisai, HE Fei, YU Keji, WANG Jun

“…By WGCNA analysis of transcriptome data, 13 co-expression modules were obtained. …”
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Physiological and Transcriptomic Mechanisms Underlying Vitamin C-Mediated Cold Stress Tolerance in Grafted Cucumber by Panpan Yu, Junkai Wang, Xuyang Zhang, Zhenglong Weng, Kaisen Huo, Qiuxia Yi, Chenxi Wu, Sunjeet Kumar, Hao Gao, Lin Fu, Yanli Chen, Guopeng Zhu

“…Results showed that 150 mg L⁻¹ Vc treatment was most impactive, significantly reducing the cold damage index while increasing the root-to-shoot ratio, root vitality, chlorophyll content, and activities of antioxidant enzymes (SOD, POD, CAT). …”
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Microbiome drives age-dependent shifts in brain transcriptomic programs at the single-cell level in Drosophila by Dianshu Zhao, Russel T. Shiga, Zhangrong Song, Runhang Shu, Lipin Loo, Adam Chun Nin Wong

“…Transcriptional shifts were most pronounced in old flies, with glial cells and dopaminergic neurons among the most microbiome-responsive cell types. …”
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Transcriptomic alterations in the ovine caruncular endometrium due to imbalanced nutrition and FSH-induced ovarian hyperstimulation by Özlem Bedir, Miguel Tavares Pereira, Hubert Rehrauer, Anna Grazul-Bilska, Mariusz P. Kowalewski

“…., both OF and UF) was associated with enrichment of terms associated with cell adhesion and differentiation, immune response and angiogenesis. The FSH carry-over effects resulted in a higher number of DEGs in CF animals (1374), than in OF (168) or UF (18), mostly associated with dysregulation of cell cycle and hormonal sensitivity. …”
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Transcriptome-based WGCNA reveals the molecular regulation of xylem plasticity in acclimation to drought and rewatering in mulberry by Yue Tian, Yue Tian, Zeyang Zhai, Zeyang Zhai, Yujie Yang, Yujie Yang, Kaixin Zhang, Kaixin Zhang, Sang Ma, Sang Ma, Jialing Cheng, Jialing Cheng, Li Liu, Li Liu, Xu Cao, Xu Cao

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Proteomic and transcriptomic analyses identify apo-transcobalamin-II as a biomarker of overall survival in osteosarcoma by Ryan A. Lacinski, Ryan A. Lacinski, Sebastian A. Dziadowicz, Sebastian A. Dziadowicz, Clark A. Roth, Li Ma, Li Ma, Vincent K. Melemai, Brody Fitzpatrick, Edwin Chaharbakhshi, Tanya Heim, Ines Lohse, Karen E. Schoedel, Gangqing Hu, Gangqing Hu, Nicolas J. Llosa, Kurt R. Weiss, Brock A. Lindsey

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Single-Cell Transcriptomic Dataset of RPGR-associated Retinitis Pigmentosa Patient-Derived Retinal Organoids by Ting Li, Yuting Ma, Yun Cheng, Yingke Zhao, Zhixu Qiu, Hongli Liu, Daowei Zhang, Jiawen Wu, Junfeng Li, Shenghai Zhang, Jihong Wu

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Single-cell transcriptomic profiling of immune landscape in triple-negative breast cancer during neoadjuvant chemotherapy by M. R. Patysheva, P. S. Iamshchikov, A. A. Fedorenko, O. D. Bragina, M. A. Vostrikova, E. Y. Garbukov, N. V. Cherdyntseva, E. V. Denisov, T. S. Gerashchenko

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CCR7 in esophageal squamous cell carcinoma: an identification from single-cell and bulk transcriptome sequencing by Yang Yu, Qian Zhao, Hongguang Cui, Liang Song

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DLX4 regulates rheumatoid arthritis fibroblast-like synoviocytes invasiveness and a cancer transcriptomic signature by Teresina Laragione, Carolyn Harris, Percio S. Gulko

“…HMOX1 and SOD2 were among the genes with the most significantly increased expression, while CPNE3 and HADHA were among those with the most significantly decreased expression in FLS knocked down for DLX4 compared with controls. …”
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Protein elicitor PeVn1 induces resistance to Botrytis cinerea in strawberry and differential transcriptomic analysis by Ziyu Zhang, Dong Wang, Yu Wang, Baozhu Dong, Jianxiu Hao, Hongyou Zhou

“…Botrytis cinerea is one of the most destructive diseases in strawberry cultivation. …”
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Developing transcriptomic biomarkers for TAVO412 utilizing next generation sequencing analyses of preclinical tumor models by Ying Jin, Peng Chen, Huajun Zhou, Guangmao Mu, Simin Wu, Zhengxia Zha, Bin Ma, Chao Han, Mark L. Chiu, Mark L. Chiu

“…ConclusionsIn implementing precision medicine by leveraging preclinical model data, a predictive transcriptomic biomarker empowered by next-generation sequencing was identified that could optimize the selection of patients that may benefit most from TAVO412 treatment. …”
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High-throughput transcriptome sequencing and comparative analysis of Escherichia coli and Schizosaccharomyces pombe in respiratory and fermentative growth. by Joivier Vichi, Emmanuel Salazar, Verónica Jiménez Jacinto, Leticia Olvera Rodriguez, Ricardo Grande, Edgar Dantán-González, Enrique Morett, Armando Hernández-Mendoza

“…In aerobic glycolysis, most of the expressed genes were associated with cell proliferation in both organisms, including amino acid metabolism and glycolysis. …”
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Identification of novel biomarkers involved in oral squamous cell carcinoma by whole transcriptome sequencing and bioinformatics analysis by Hongliang Du, Zhenze Wang, Mengyi Qi, Yunqing Pang, Qingling Lin, Dengqi He, Jing Wang

“…Abstract Background Oral squamous cell carcinoma (OSCC) is among the most common malignant tumors in the oral and maxillofacial regions, characterized by high drug resistance and poor treatment outcomes. …”
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Transcriptomal profiling of bovine ovarian granulosa and theca interna cells in primary culture in comparison with their in vivo counterparts. by Nicholas Hatzirodos, Claire Glister, Katja Hummitzsch, Helen F Irving-Rodgers, Philip G Knight, Raymond J Rodgers

“…In vitro culture of ovarian granulosa cells and theca cells has been very important for our understanding of their function and regulation. One of the most eagerly sought attributes of cell culture is the use of chemically-defined conditions. …”
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Comparative transcriptome analysis of Labeo calbasu (Hamilton, 1822) from polluted and non-polluted rivers in India. by Smruti Priyambada Pradhan, Hirak Jyoti Chakraborty, Ayushman Gadnayak, Subhashree Subhasmita Raut, Dhruba Jyoti Sarkar, Anu Sharma, Dwijesh Chandra Mishra, Mohammad Samir Farooqi, Bijaya Kumar Behera, Basanta Kumar Das, Centre for Agricultural Bioinformatics (CABin) Scheme, ICAR-IASRI, New Delhi

“…RANBP2 and egr1 lncRNA are the most significantly interlinked with ndc1 and fosab lncRNA.…”
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Integrated transcriptomic and metabolomic analysis of flavonoid biosynthesis in cigar tobacco leaves under variable nitrogen regimes by Kai Jia, Juanjuan Shi, Lingli Bai, Xueren Wang, Yuemin Wang, Xiangzhen Li, Wenqing Li, Chaoyuan Zheng

“…The reliability of transcriptome data was validated via qPCR.DiscussionThese results provide a scientific basis for elucidating the biosynthesis mechanisms of tobacco flavonoids and identifying key nitrogen-responsive genes. …”
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The mechanism underlying B-cell developmental dysfunction in Kawasaki disease based on single-cell transcriptomic sequencing by Qiuping Lin, Zhen Wang, Guohui Ding, Guang Li, Liqin Chen, Qingzhu Qiu, Sirui Song, Wei Liu, Xunwei Jiang, Min Huang, Min Huang, Libing Shen, Tingting Xiao, Lijian Xie, Lijian Xie, Lijian Xie

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Transcriptome-based studies on the candidate genes related to body color yellowing in channel catfish (Ictalurus punctatus) by Chunyu Xue, Haifeng Mi, Dongyu Huang, Hualiang Liang, Ahmed Mohamed Aboseif, Mingchun Ren, Lu Zhang

“…Seven DEGs related to pigment regulation were selected for qRT-PCR analysis, and the results confirmed that the transcriptome analysis was reliable. Furthermore, the DEGs were subjected to Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis, and the results showed that most of the DEGs were involved in immune response, endocytosis, cell adhesion molecules, etc. …”
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