CytoLNCpred-a computational method for predicting cytoplasm associated long non-coding RNAs in 15 cell-lines by Shubham Choudhury, Naman Kumar Mehta, Gajendra P. S. Raghava

“…The function of long non-coding RNA (lncRNA) is largely determined by its specific location within a cell. …”
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Accuracy Maximization Analysis for Sensory-Perceptual Tasks: Computational Improvements, Filter Robustness, and Coding Advantages for Scaled Additive Noise. by Johannes Burge, Priyank Jaini

“…As natural stimuli become more widely used in the study of psychophysical and neurophysiological performance, we expect that task-specific methods for feature learning like AMA will become increasingly important.…”
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DNA Damage-Induced Ferroptosis: A Boolean Model Regulating p53 and Non-Coding RNAs in Drug Resistance by Shantanu Gupta, Daner A. Silveira, José Carlos M. Mombach, Ronaldo F. Hashimoto

“…Additionally, p53-induced miR-34c-5p suppresses cancer cell proliferation and drug resistance by modulating Myc, an oncogene further influenced by non-coding RNAs like circular RNA NOTCH1 (CricNOTCH1) and long non-coding RNA MALAT1. …”
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Evolution of cetacean-specific conserved non-coding elements suggests their role in the limb changes during secondary aquatic adaptation by Zhenhua Zhang, Zhenpeng Yu, Yujie Chong, Yao Liu, Jia Liu, Wenhua Ren, Shixia Xu, Guang Yang

“…Limb modifications (e.g., flipper-like forelimbs and hindlimb regression) are among the most critical secondary aquatic adaptation mechanisms enabling cetaceans to fully adapt to an aquatic environment. …”
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A novel approach to enhance glioblastoma multiforme treatment efficacy: non-coding RNA targeted therapy and adjuvant approaches by Meijun Liu, Yuying Wang, Xiaoli Chen, Yu Zeng, Wenqiong Huang, Jiawen Yang, Hong Dai, Lixin Cheng, Claudio Mauro, Kenneth Chat Pan Cheung

“…Additionally, compounds like histone deacetylase inhibitors (e.g., vorinostat) are being investigated for their impact on non-coding RNA (ncRNA) modulation, including microRNAs (miRNAs) and long non-coding RNAs (lncRNAs). …”
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Transcriptomic analysis reveals long non-coding RNA involved in the key metabolic pathway in response to Botrytis cinerea in kiwifruit by Yijia Ma, Tianjing Zeng, Zhexin Li, Dengwei Jue, Yuan Sui, Xu Wang, Hongpan Zhong, Jiaqi Yang

“…Abstract Background Understanding the molecular mechanisms that confer kiwifruit resistance to Botrytis cinerea is essential for developing resistant cultivars. Long non-coding RNAs (lncRNAs), known to participate in various physiological processes including plant defense against diseases, have an undefined role in kiwifruit’s resistance. …”
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Racial differences in primary sclerosing cholangitis: A retrospective cohort study leveraging a new ICD-10 code by Melinda Wang, Alyssa Harris, Charles E. McCulloch, Sharad I. Wadhwani, Jennifer C. Lai, Jessica B. Rubin

“…We aimed to leverage a new PSC ICD-10 code to characterize racial differences in a nationwide contemporary cohort of patients with PSC. …”
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Natural self-attenuation of pathogenic viruses by deleting the silencing suppressor coding sequence for long-term plant-virus coexistence. by Li Qin, Xiaoqing Wang, Zhaoji Dai, Wentao Shen, Fangfang Li, Aiming Wang, Adrián A Valli, Hongguang Cui

“…To our knowledge, this is the first report of potyvirid self-attenuation via coding sequence loss.…”
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Alternative splicing of the FLOWERING LOCUS C-like gene MaMADS33 is associated with endodormancy in mulberry by Yiwei Luo, Hongjiang Liu, Yuanxiang Han, Wei Li, Wuqi Wei, Ningjia He

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Expression of human Krüppel‐like factor 3 in peripheral blood as a promising biomarker for acute leukemia by Miao Yan, Huihui Liu, Junhui Xu, Xinan Cen, Qian Wang, Weilin Xu, Wensheng Wang, Zhixiang Qiu, Jinping Ou, Yujun Dong, Ping Zhu, Hanyun Ren, Fuchu He, Mangju Wang

“…Abstract Background Universal gene targets are in persistent demand by real‐time quantitative polymerase chain reaction (RT‐qPCR)‐based methods in acute leukemia (AL) diagnosis and monitoring. Human Krüppel‐like factor 3 (hKLF3), a newly cloned human transcription factor, has proved to be a regulator of hematopoiesis. …”
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SWI/SNF-like chromatin remodeling factor Fun30 supports point centromere function in S. cerevisiae. by Mickaël Durand-Dubief, William Ryan Will, Edoardo Petrini, Delphine Theodorou, Rachael R Harris, Margaret R Crawford, Konrad Paszkiewicz, Felix Krueger, Rosa Maria Correra, Anna T Vetter, J Ross Miller, Nicholas A Kent, Patrick Varga-Weisz

“…Here we show that Fun30, a poorly understood SWI/SNF-like chromatin remodeling factor conserved in humans, promotes point centromere function through the formation of correct chromatin architecture at centromeres. …”
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Identification of the Wheat Protein Disulfide Isomerase-like Gene Family and Its Impact on the Structure and Properties of Gluten by JIANG Lanfang, TAN Xiaodi, LIU Xinyu, HAO Jianyu, MA Xiaofei, WANG Min, LI Xiaoli, JI Hutai, ZHANG Dingyi, ZHANG Yang

“…Bioinformatics methods were used for the genome-wide identification of the wheat (Triticum aestivum) protein disulfide isomerase-like (TaPDIL) gene family. A total of 21 members of the TaPDIL gene family were identified and named TaPDIL1A to TaPDIL8D according to their chromosomal positions, and the length of their coding sequences, the physicochemical properties and secondary structure of the encoded proteins and their subcellular localization were evaluated as well as their expression patterns during grain development in high-gluten (Yaomai 36) and all-purpose (Pinyu 8155) wheat cultivars. …”
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Evaluating the Reasoning Capabilities of Large Language Models for Medical Coding and Hospital Readmission Risk Stratification: Zero-Shot Prompting Approach by Parvati Naliyatthaliyazchayil, Raajitha Muthyala, Judy Wawira Gichoya, Saptarshi Purkayastha

“…However, their reliability across critical tasks like diagnosis, medical coding, and risk prediction has received mixed reviews, especially in real-world settings without task-specific training. …”
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Sequence simplification of antigen coding IVT mRNA allows accelerated synthetic DNA template generation and epitope immunogenicity validation by Arthur Esprit, Dorien Autaers, Ilke Aernout, Ine Lentacker, Steve Pascolo, Kris Thielemans, Karine Breckpot, Lorenzo Franceschini

“…After initial investigation, showcasing the effect of sequence, or chemical, modifications on mRNA translation and protein expression, we validated the effect of a structural deconstruction on antigen coding mRNA, observing preserved antigen presentation upon removal of stabilizing structures like the 5′ and 3′ UTRs and poly-A tail. …”
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Protogenin facilitates trunk-to-tail HOX code transition via modulating GDF11/SMAD2 signaling in mammalian embryos by Yu-Sheng Hung, Wei-Mi Lin, Yu-Chiuan Wang, Wei-Chih Kuo, Yu-Yang Chen, Ming-Ji Fann, Jenn-Yah Yu, Yu-Hui Wong

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Mutually Orthogonal Golay Complementary Sequences in Medical Ultrasound Diagnostics. Experimental Study by Ihor Trots, Norbert Żołek, Yurij Tasinkevych, Janusz Wójcik

“…Parameters of the detected MOGCS echoes like SNR, SLL and axial resolution were determined and compared to that of the standard CGCS and the short two-sine cycles pulse. …”
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Elucidating long non-coding RNA networks in tomato plants in response to Funneliformis mosseae colonization and cucumber mosaic virus infection by Narjes Maleki, Abozar Ghorbani, Mahsa Rostami, Solomon Maina

“…Abstract Tomato plants face biotic challenges like infections by cucumber mosaic virus (CMV), a member of the Cucumovirus genus in the Bromoviridae family, as well as beneficial interactions, such as colonization by the symbiotic fungus Funneliformis mosseae, which belongs to the Glomeraceae family. …”
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The interpretation of code status concept among pediatric health care workers, a multicenter cross sectional study across Lebanon by Raymonda Chahrour, Amani Bannout, Marianne Majdalani, Rana Yamout, Ali Ismail, Elma Abou Raffoul, Jihane Moukhaiber

“…Four Resuscitation-limiting Codes other than Full Code exist. In a conservative country like Lebanon, several factors can influence such decisions, namely the ethical, legal, religious perspectives, pediatric population, and more importantly the lack of protocol, healthcare workers (HCWs) knowledge, understanding and readiness to discuss terminal care with the parents. …”
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Enhanced Spatial Clustering for Crime Analysis: Novel Advances in Ward-Like and SKATER Algorithms for Brazilian Public Security by Raydonal Ospina, Alexsandra Gomes De Lima, Cristiano Ferraz, Cecilia Castro, Carlos Martin-Barreiro, Victor Leiva

“…All computations were performed in the <monospace>R</monospace> software and both the code and methods are readily transferable to other cities facing similar crime-mapping challenges.…”
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Evaluating the performance of artificial intelligence in summarizing pre-coded text to support evidence synthesis: a comparison between chatbots and humans by Kim Nordmann, Stefanie Sauter, Mirjam Stein, Johanna Aigner, Marie-Christin Redlich, Michael Schaller, Florian Fischer

“…Human responses were less likely to add new content to the original text or include interpretation. …”
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