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    RMDNet: RNA-aware dung beetle optimization-based multi-branch integration network for RNA–protein binding sites prediction by Jiangbo Zhang, Yunhui Peng, Feifei Cui, Zilong Zhang, Shankai Yan, Qingchen Zhang

    Published 2025-07-01
    “…A downstream case study on YTHDF1 focuses on analyzing interpretable spatial binding patterns, using a large-scale prediction dataset and CLIP-seq peak alignment. The results confirm that the model captures localized binding signals and spatial consistency with experimental annotations. …”
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    MEGDTA: multi-modal drug-target affinity prediction based on protein three-dimensional structure and ensemble graph neural network by Zhanwei Hou, Yijun Li, Haixia Zhai, Junwei Luo, Yulian Ding, Yi Pan

    Published 2025-08-01
    “…The key to accurate DTA prediction lies in selecting appropriate computational models to effectively extract features from drug molecular structures and target protein structures. …”
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