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    Reliable protein–protein docking with AlphaFold, Rosetta, and replica exchange by Ameya Harmalkar, Sergey Lyskov, Jeffrey J Gray

    Published 2025-05-01
    “…Despite the recent breakthrough of AlphaFold (AF) in the field of protein sequence-to-structure prediction, modeling protein interfaces and predicting protein complex structures remains challenging, especially when there is a significant conformational change in one or both binding partners. …”
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