Dataset of the complete mitogenomes of the mushroom corals FungiidaeNCBINCBINCBINCBINCBINCBINCBINCBINCBINCBINCBINCBINCBINCBINCBINCBINCBINCBINCBINCBINCBINCBINCBINCBI by Liwei Li, Zhangwang Lu, Zhiwei Liu, Cheng Liang, Jun Wang, Yan Wang

“…Similar to the phylogenetic tree based on partial COI sequences, Bayesian phylogenetic trees constructed using 13 PCGs, IGRCOX1-trnM and IGRND4-rrnS divide Fungiidae into four distinct clades. …”
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Evaluation of water ecological security and diagnosis of Obstacles in the Yangtze river delta, China by Aishan Ye, Xiaohua Li, Jiayi Cai, Yangyang Deng

“…Abstract The Yangtze River Delta (YRD), as China’s socioeconomic core, faces compound pressures from water scarcity, pollution, and ecosystem degradation, with water ecological security emerging as a critical bottleneck for sustainable development. This study aims to construct a comprehensive evaluation system and identify key constraints to provide scientific guidance for urban agglomeration water security management. …”
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Data-driven design of topologically optimized auxetic metamaterials for tailored stress–strain and Poisson’s ratio-strain behaviors by Yueyou Tang, Anfu Zhang, Qi Zhou, Mu He, Liang Xia

“…High-precision neural networks are then trained using geometric features extracted through PCA (principal component analysis), enabling real-time, simultaneous prediction of stress–strain and Poisson’s ratio–strain responses. By combining evolutionary strategies with an adaptive learning factor, we construct an efficient global optimization model that enables high-accuracy coupled customization of both curves under finite deformation. …”
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Chromosome-level genome assembly provides insights into flavonoid biosynthesis in stems and leaves and fatty acid biosynthesis in kernels of Erythropalum scandens by Tianwei Yang, Shiyu Huang, Xiangjun Zhang, Shanshan Tian, Manrong Gao, Shangwen Zhang

“…A high-quality genome for E. scandens was constructed employing PacBio + Hi-C + Illumina sequencing technologies. …”
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Prediction Model of Household Carbon Emission in Old Residential Areas in Drought and Cold Regions Based on Gene Expression Programming by Shiao Chen, Yaohui Gao, Zhaonian Dai, Wen Ren

“…Subsequently, a hybrid prediction model was constructed, with its parameters optimized by minimizing the root mean square error (RMSE) as the fitness function. …”
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The complete mitochondrion genome of the Hoge’s Side-necked turtle Ranacephala hogei (Chelidae), a critically endangered species from South America by Ana Teresa Dumans, Alexandre Pedro Selvatti, Deise Schroder Sarzi, Carolina Furtado, Gláucia Drummond, Marcos Coutinho, Daniel Cardoso Carvalho, Francisco Prosdocimi

“…Maximum likelihood and Bayesian phylogenomic trees were constructed using the concatenation of the alignments of all protein coding and ribosomal genes and compared to the data obtained from other 15 complete mitochondrial genomes available for the suborder Pleurodira plus five Cryptodira taxa as outgroups in the GenBank database. …”
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Comprehensive assessment and analysis of urban resilience based on fusion modeling–taking guilin as an example by Liduo Dou, Lanwei Zhu, Yuxin He, Meiqing Wu, Yifei Guo

“…The results show that:(1) During the period 2000-2023, Guilin's urban resilience as a whole shows a fluctuating ‘V-shaped’ development.(2) Guilin City demonstrates clear evolutionary resilience, with its four area types undergoing leapfrogging and transformation across both time and space. …”
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Molecular Divergence and Species Delimitation of the Cultivated Oyster Mushrooms: Integration of IGS1 and ITS by Farhat Ahmadi Avin, Subha Bhassu, Yee Shin Tan, Pedram Shahbazi, Sabaratnam Vikineswary

“…In spite of achieving a proper classification of species by combination of IGS1 and ITS sequences, the phylogenetic tree showed the misclassification of the species of P. nebrodensis and P. eryngii var. ferulae with other strains of P. eryngii. However, the constructed median joining (MJ) network could not only differentiate between these species but also offer a profound perception of the species’ evolutionary process. …”
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Comparative Interactome Profiling of Nonstructural Protein 3 Across SARS-CoV-2 Variants Emerged During the COVID-19 Pandemic by Valeria Garcia Lopez, Lars Plate

“…These results underscore how minor mutations reshape host interactions, emphasizing the evolutionary arms race between the host and virus. We provide a roadmap to track the interaction changes driven by SARS-CoV-2 variant evolution.…”
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Ecological Safety Evaluation and Influencing Factors of Yellow River Basin Based on DPSIR Model by Yanxia Wu, Zhibin Wei, Aiqiong Wang

“…[Methods] An ecological safety index system was constructed based on the DPSIR model. The entropy weight-TOPSIS method was used to comprehensively evaluate the ecological safety of the provinces along the Yellow River basin from 2011 to 2020. …”
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Rapid turnover of long noncoding RNAs and the evolution of gene expression. by Claudia Kutter, Stephen Watt, Klara Stefflova, Michael D Wilson, Angela Goncalves, Chris P Ponting, Duncan T Odom, Ana C Marques

“…Determining the extent by which transcription of lncRNA loci is retained or lost across multiple evolutionary lineages is essential if we are to understand their contribution to mammalian biology and to lineage-specific traits. …”
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Predicting potential recovery of the endangered bromeliad Tillandsia utriculata: An agent-based modeling approach. by Alexandra M Campbell, Anna C Kula, Rachel S Jabaily, Brad Oberle, Brian Sidoti, Alex Capaldi, Erin N Bodine

“…Some rare species may persist through rapid evolution to tolerate or escape new threats, but representing the underlying ecological and evolutionary processes at the appropriate scale is analytically and computationally challenging. …”
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The First Report of Rhino DNA in Thailand: A Possible Extinct Indian Javan Subspecies, <i>Rhinoceros sondaicus inermis</i> by Yada Katanyuphan, Pipad Krajaejun, Athiwat Wattanapituksakul, Wunrada Surat

“…This is the first report of rhino DNA from Thailand and possibly the Indian Javan rhino DNA, which could be used for evolutionary studies.…”
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DNA Barcoding: A Study of Guppy Fish (Poecilia reticulata) in East Java, Indonesia by Sucipto Hariyanto, Hasan Adro’i, Mahrus Ali, Bambang Irawan

“…Extraction, amplification, and sequencing of DNA samples were conducted to obtain the genetic data and construct a phylogenetic tree based on DNA sequences. …”
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Genesis of the Logico-Semantic Organization of Adolescents Speech in the Post-Nonclassical Perspective of the Contemporaneity by Natalya Tokareva

“…Comparison of the average values of predicators of the psycholinguistic profile of verbal constructs of adolescents of different ages revealed certain differences in the compared groups and showed nonlinearity of the respondents speech development. …”
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Reciprocal regulation between Acinetobacter baumannii and Enterobacter cloacae AdeR homologs: implications for antimicrobial resistance and pathogenesis. by Marc Gaona, Jordi Corral, Miquel Sánchez Osuna, Susana Campoy, Jordi Barbé, María Pérez-Varela, Jesús Aranda

“…The findings of this work highlight that conserved regulatory functions concerning efflux pump expression can be maintained across species despite evolutionary divergence and open new perspectives for the control of bacterial infections.…”
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Fucose as a nutrient ligand for Dikarya and a building block of early diverging lineages by Małgorzata Orłowska, Drishtee Barua, Sebastian Piłsyk, Anna Muszewska

“…Massive gene loss has shaped the evolutionary history of these metabolic pathways, leading to a repeated reduction of these pathways in most yeast-forming lineages. …”
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Complete chloroplast genome sequencing of Pseudocodon convolvulaceus, a medicinal herb from Qinghai-Tibet Plateau in China. by Likuan Liu, Qiwen Li, Jingxuan Du, Weibo Yuan, Rui Sun, Haoyu Liu, Jinping Li

“…A phylogenetic tree was constructed based on the chloroplast genomes of 19 published Campanulaceae species, utilizing two Asteraceae species as outgroups. …”
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Features of influenza virus hemagglutinin genes and their recoding possibilities by Eugene P. Kharchenko

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An Efficient Deep Learning Framework for Revealing the Evolution of Characterization Methods in Nanoscience by Hui-Cong Duan, Long-Xing Lin, Ji-Chun Wang, Tong-Ruo Diao, Sheng-Jie Qiu, Bi-Jun Geng, Jia Shi, Shu Hu, Yang Yang

“…Highlights A framework combining the citation analysis with topic modeling is designed to construct the knowledge graph of a research field. …”
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